Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2930 ATGGTAGGGTTGAAGCTATCATCAGTGTCAGAGATGAACAAGAGGCCGGTAGCAGAGAACAACAACAACGACAATAACTCAGCAGCAGGCACAGATGACAACGAATGCACGGTGAGGGAGCAAGACCGTTTCATGCCAATAGCAAATGTGATTAGGATAATGCGCAAGATCCTACCTCCACATGCAAAAATCTCCGATGATGCAAAAGAAACAATCCAAGAGTGTGTGTCGGAGTACATCAGCTTCATCACTGGGGAGGCCAACGAGCGTTGCCAGAGGGAGCAGCGCAAGACCATCACCGCCGAGGATGTTCTTTGGGCCATGAGCAAGCTCGGCTTCGATGACTACATTGAGCCTCTCACAATGTACCTTCACAGGTACCGTGAGCTTGAGGGTGACCGCACCTCCATGAGGGGCGAGCCACTCGGGAAGAGGGCCGTCGAGTATGGGGCTCTTGGGGTTGCTACTGCTTTTGTGCCCCAGTTTCACATTGGCCATCATCATCCTAATGGCTACTTTGGTTCACCCATAGGGACTTACATGAGGGATGCACCTAATGCAGCAGGATCATCTCAGTCTCAGGCTTCGCTCGCAAATGCTGAACCAAATAATGGTCAATATAAATGA 627 0.5056 MVGLKLSSVSEMNKRPVAENNNNDNNSAAGTDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRAVEYGALGVATAFVPQFHIGHHHPNGYFGSPIGTYMRDAPNAAGSSQSQASLANAEPNNGQYK* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2930 208 MobiDBLite consensus disorder prediction 1 35 - -
Dod05g2930 208 MobiDBLite consensus disorder prediction 184 208 - -
Dod05g2930 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
Dod05g2930 208 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Dod05g2930 208 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Dod05g2930 208 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Dod05g2930 208 Gene3D Histone, subunit A 30 148 IPR009072 GO:0046982
Dod05g2930 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod05g2930 208 MobiDBLite consensus disorder prediction 185 208 - -
Dod05g2930 208 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod05g2930 208 MobiDBLite consensus disorder prediction 13 34 - -
Dod05g2930 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 18 156 - -
Dod05g2930 208 SUPERFAMILY Histone-fold 41 140 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2930 Dod-Chr5 55224822 55225448 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2930 23 175 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.072 1.22e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod05g2930 CBFD_NFYB_HMF 5.6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2930 K08065 - gmx:100800011 289.271