Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2925 ATGGCTGAATCAGACAACGAGTCAGGAGGTCAAGGCGGTAACGGAGGGTGCAGGGAGCAGGACAGGCTGCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGCCTTACCGGCCAACGCAAAGATCTCCAAAGAGGCCAAGGAGACTGTGCAAGAGTGTGTGTCAGAGTTCATCAGCTTCATAACAGGGGAGGCCTCTGACAAGTGCCAGAAGGAGAAGAGGAAGACCATCAACGGCGATGATCTGCTGTGGGCCATGACCACCCTGGGCTTTGAGGAGTATGTGGAGCCCCTTAAGATTTACCTGCACAAGTACAGGGAGATGGAGGGGGAGAAGACTGCTTTGATGGGGAGGCCGCAGCAGGGTGATCATGGTGGTGATGCTGAGGGTGGTGGTGGTGGTGGAAGTGGGCTTTATGGTCATGGTGGTAGTGGGGTGTCATCATCATCATCCTCTATGATGATGATGATGATGGGCCATCAGCAGCACATGTATGGATCTGGGAATGGATCATCAGCATCTTCTGGAAGAACTAGATGA 543 0.5322 MAESDNESGGQGGNGGCREQDRLLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTALMGRPQQGDHGGDAEGGGGGGSGLYGHGGSGVSSSSSSMMMMMMGHQQHMYGSGNGSSASSGRTR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2925 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod05g2925 180 MobiDBLite consensus disorder prediction 117 152 - -
Dod05g2925 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 168 - -
Dod05g2925 180 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Dod05g2925 180 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Dod05g2925 180 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Dod05g2925 180 MobiDBLite consensus disorder prediction 1 20 - -
Dod05g2925 180 Gene3D Histone, subunit A 14 130 IPR009072 GO:0046982
Dod05g2925 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Dod05g2925 180 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod05g2925 180 SUPERFAMILY Histone-fold 20 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2925 Dod-Chr5 55183035 55187459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2925 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.127 1.60e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod05g2925 CBFD_NFYB_HMF 2.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2925 K08065 - gmx:100778034 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2925 05 55183035 55187459 Dod03g0964 03 11779377 11780611 PCT