Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2899 ATGGTTTCTACGGAGAACGATTCTTACTCCAATTCGAAACCGTTGTTCCTTCTGCCCCGAACCTGTCACTCCAGCACCACCATTTCTGCGAATGACCACCGTCACATCGGAAGGTCCATGCGAACAATACGCTCCAACCTCTTCCAAGAGGACGACCACCACAACCACACCCGCTCCTTCACCACCGCCACCGCCGCCACACAAGCATCCTCATTCATCTCCGAAAACCTCACGGACTCCGCCGTGGACCTCAGCCTCCGCGAGCTCGCCTACCGAAACAACAAATCCGTGAAGTCCTCCTCGCTCACGGAGGAAGACCTCCATGAACTTTCTAGATCCTTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCTGGGGAGCTCCAACGCCTCGCTAGTGTCCCCTCATTCGAGAGCATGCATAACAACCACCGCGATGCTGACGTGGACAGAGAACAACTGCCGGAGCCAGAGCCCTGCCTAGGGTTCCTCCAGAGAGAGAACTTCTCCACCGAGATTATCGAGAGCATCTCGCCGGAGGATCTTCTGCCGACGGTCAAGATCTGCATCGACGGCCTGCAATCTCCCTCCGTCGCTGTGAAGCGATCGGCGGCGGCGAAGCTCAGGCTATTGGCAAAGAACCGCGCCGACAACCGCGCTCTGATCGGCGAGTCCGGTGCGGTCCCTGCTCTTGTTCCCCTTCTCCTGTGCAGCGATCCGTGGACGCAGGAACACGCCATGACGGCGCTGCTGAACCTGTCTCTGCACGAGGATAACAAGATGCTGATAATTAATGCTGGTGCCGTTAAGTCTTTGATCTATGTGCTGAAAACTGGGACGGAGACTTCGAAGCAGAACACGGCCTATGCGCTGGTGGAAGAGAACAAGGGCTCAATTGGCGCGTGTGGCGCGATTCCGCCGCTGGTTTCGTTGCTGCTGAGTGGTTCCAACAGGGGGAAGAAGGACGCACTGACGACGCTGTATAAGCTGTGTTCAGTGAGGTAG 1005 0.5711 MVSTENDSYSNSKPLFLLPRTCHSSTTISANDHRHIGRSMRTIRSNLFQEDDHHNHTRSFTTATAATQASSFISENLTDSAVDLSLRELAYRNNKSVKSSSLTEEDLHELSRSFSDFSACSSDISGELQRLASVPSFESMHNNHRDADVDREQLPEPEPCLGFLQRENFSTEIIESISPEDLLPTVKICIDGLQSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLLCSDPWTQEHAMTALLNLSLHEDNKMLIINAGAVKSLIYVLKTGTETSKQNTAYALVEENKGSIGACGAIPPLVSLLLSGSNRGKKDALTTLYKLCSVR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2899 334 Gene3D - 290 334 IPR011989 -
Dod05g2899 334 Pfam Armadillo/beta-catenin-like repeat 294 332 IPR000225 GO:0005515
Dod05g2899 334 Pfam Armadillo/beta-catenin-like repeat 217 254 IPR000225 GO:0005515
Dod05g2899 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 226 268 IPR000225 GO:0005515
Dod05g2899 334 Gene3D - 165 289 IPR011989 -
Dod05g2899 334 SMART arm_5 215 255 IPR000225 GO:0005515
Dod05g2899 334 SMART arm_5 292 332 IPR000225 GO:0005515
Dod05g2899 334 PANTHER U BOX DOMAIN-CONTAINING 7 334 - -
Dod05g2899 334 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 7 334 - -
Dod05g2899 334 SUPERFAMILY ARM repeat 179 332 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2899 Dod-Chr5 54903676 54904680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2899 193 332 U-box Gene Family AT3G46510 33.562 2.96e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2899 - - qlo:115991839 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2899 05 54903676 54904680 Dod03g0931 03 11435604 11438956 PCT