Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2891 ATGTCTTTTCTCCAAAACCCCGGCGCCCTCCACCACCTCCTCTGCGGCGTGGGCCCCACCACCACCATCGATTACCCCCACCGCCTCCCTTCCAAGCGCAAGCTCGAAGACATCGGCCCCATCGCCGATGACGACGACGACGACGACTACGATGACGTCCGCTTCAACGGCTACGGCGACGATTCCATGAGCGAGTTGGTGTCGGTGAGAATGAGGAAAGACGAAGGCGGCGGAGCAGCGGCCGTGAATTCTTCGTTCTGGTCCCCAATCCGAAGCCCCTTGTCGGGGCCCCAATGGGGCTGGTCAACACGCGCCCTCGCCCCCTTGCAGTTCTTCATCCGAATGATGTCCGAAGGCAACACCATGGTCATGCATGCCTTCCCCGAAGACAGCGTCAAATCCATTCACGAGCGCATTCAGCTCATCAAGGGCATTCCCGTCTTTGAACAGAGGCTCATCTACAGAGGGAAGCAGCTGCAGTGGGAGCAGACCCTCGCTGAATGCTCCATTCAAAAGGACGCTAACCTTCAGTTGGTTGGTCGCATGCGCAGCACCGCGCACCCCCACGCCTGGCAGATCATGAACGACATGACCTCTCTTGTCTACCGAATGTGCAGAGGGGAGCTCCTCGATGACCCCCTCAAGACTATGCGGGGTCTCGTTGACAGCTTCCTTAGGATGGTCCCTAAGGTTGACTCTGACTCTGCTGCAGGTAACAAGGATTGTGCTGAGTCATCTGTTAGGCATTTCGTTATTTCTAGTCGTACCACATTGTCTGAGGAGTTGCATAGTCATTGCGCCCTTGTGGTGTTGGAGTTTTGCAAATTGCTTAGGATGACTTACTTTGAGGACCCTTTGTATATATTTTGTCGGACTACTTTGGGGTCCTTGTTGGAAACTGACTGCGTTTCTTGTGGTACTGCTGCTGATGCTGAGGATGTTAAAGGGTTGGTTTTGGTTCAGGATATTTTCCCCTTTGTTCGTGAGCTTGCCGTCAGCTTGTTGGCTGATTTGGATTTGACTATGGATTCCCCTCCTTGCACTGTGTCATTGGACAGCGACATTAGGGATATCACTGCATTCTTGGTCCCGGTGAGGTCCGTAATCAGGGTGCAACAAGCTCTCTTGGGTTCTGTGACCGTTGAGGAGGGGAGAATGGAGGTCTTTTTCGGTGAAGAGACTGAATCCCTTCATTTTACATACATTGAGTTACTGAAGAAGATGGATGAGTGCCTTCAAAAAGTGGAGAGCTGCTTGGCAGACCAGGAGATAACGGAAGGGCATAGTCATTATAATGCGTGGTCTCAGTATCTCACCATTTTGAAGGAGTTGCATCTAATCTCTAAGCTCTATGAGGGTGCTGAAGAGCAACTTTGGGATATTTTAACGCGTCAAAAATATGTGCTGTGTGTACTGATCATGCGATATGCAAAGAAGACTGATGAGCATCATTGGATCCTCGAGCGCAAGTGCGTGACGGATTTTGAATCTAGGAGGCATTTGGCGTTGATGATGCTCCCGGAGGTAAAAGATGACTATGAGGAGATGCATGAGATGCTTATTGAAAGGTCTCAGTTATTGGCTGAATCTTTCCAATACATTGGACGAGTAGTGCCTGAATCTCTGCATGGGGGCCTACTTATGGAATTCAAAAATGAGGAAGCTACTGGACCAGGTGTACTCAGGGAGTGGTTTCTTTTGGTATGTCAAGCAATATTTAATCCGGAAAATGCTCTTTTTGTCGCATGCCCAAACGACAAAAGGAGATTTTTCCCCAATCCTGCATCCAAGGTAGATCCTCTGCACCTTGATTACTTCCGTTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATGGGGTGCATGTCGGCATTGTTTTTGATCGTGTGTTTTTCCAGCAATTGGCTGGATATGAAATTACTTTAGAAGACATAAGGGATGCAGATCCACACTTGTATAGTAGCTACAAGCAGATATTGGAGATGGATCCTGGTTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAAGAATTAGGAGACATGAAAGTGGTTGAGCTTTGCCCTGGAGGGAAAAGCCTCGTTGTAAATAGTGAGAACAGGGAGATGTACATTGATCTTCTTATACAGGATCATTTCGTAAAATCCATATCTGAGCAGGTGTCACATTTTGCGAAAGGCTTTGGTGATATTCTTTCAAACTCAAGCCTCCAGCAATTCTTCTTTCAAAGTTTAGACCTTCAAGATCTTGATTGGATGCTTCATGGGAGTGAAGATATCATTTCTGTTGAGGATTGGAAGGCACATACTGAGTATCATGACTATGAAGACACAGATGCCTCAGATATCCTGGTTCTGGGAGATTGTTGGGAGAATGACAGCGGATCAAAGGAGGGTACTTCTGTTCTTCTGGACATCTGTGAAATATTTACCGGTTGA 2451 0.479 MSFLQNPGALHHLLCGVGPTTTIDYPHRLPSKRKLEDIGPIADDDDDDDYDDVRFNGYGDDSMSELVSVRMRKDEGGGAAAVNSSFWSPIRSPLSGPQWGWSTRALAPLQFFIRMMSEGNTMVMHAFPEDSVKSIHERIQLIKGIPVFEQRLIYRGKQLQWEQTLAECSIQKDANLQLVGRMRSTAHPHAWQIMNDMTSLVYRMCRGELLDDPLKTMRGLVDSFLRMVPKVDSDSAAGNKDCAESSVRHFVISSRTTLSEELHSHCALVVLEFCKLLRMTYFEDPLYIFCRTTLGSLLETDCVSCGTAADAEDVKGLVLVQDIFPFVRELAVSLLADLDLTMDSPPCTVSLDSDIRDITAFLVPVRSVIRVQQALLGSVTVEEGRMEVFFGEETESLHFTYIELLKKMDECLQKVESCLADQEITEGHSHYNAWSQYLTILKELHLISKLYEGAEEQLWDILTRQKYVLCVLIMRYAKKTDEHHWILERKCVTDFESRRHLALMMLPEVKDDYEEMHEMLIERSQLLAESFQYIGRVVPESLHGGLLMEFKNEEATGPGVLREWFLLVCQAIFNPENALFVACPNDKRRFFPNPASKVDPLHLDYFRFSGRVIALALMHGVHVGIVFDRVFFQQLAGYEITLEDIRDADPHLYSSYKQILEMDPGFIDSDALGLTFVREVEELGDMKVVELCPGGKSLVVNSENREMYIDLLIQDHFVKSISEQVSHFAKGFGDILSNSSLQQFFFQSLDLQDLDWMLHGSEDIISVEDWKAHTEYHDYEDTDASDILVLGDCWENDSGSKEGTSVLLDICEIFTG* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2891 816 Gene3D - 103 198 - -
Dod05g2891 816 ProSiteProfiles HECT domain profile. 538 795 IPR000569 GO:0004842
Dod05g2891 816 Gene3D Hect, E3 ligase catalytic domains 520 750 - -
Dod05g2891 816 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 107 784 - -
Dod05g2891 816 SMART ubq_7 109 181 IPR000626 GO:0005515
Dod05g2891 816 SMART hect_3 536 809 IPR000569 GO:0004842
Dod05g2891 816 ProSiteProfiles Ubiquitin domain profile. 109 185 IPR000626 GO:0005515
Dod05g2891 816 SUPERFAMILY Ubiquitin-like 110 198 IPR029071 -
Dod05g2891 816 Pfam Ubiquitin family 112 183 IPR000626 GO:0005515
Dod05g2891 816 SUPERFAMILY Hect, E3 ligase catalytic domain 514 783 IPR035983 GO:0004842
Dod05g2891 816 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 107 784 - -
Dod05g2891 816 Gene3D Hect, E3 ligase catalytic domain 638 720 - -
Dod05g2891 816 Pfam HECT-domain (ubiquitin-transferase) 567 783 IPR000569 GO:0004842
Dod05g2891 816 PRINTS Ubiquitin signature 162 183 IPR019956 -
Dod05g2891 816 PRINTS Ubiquitin signature 141 161 IPR019956 -
Dod05g2891 816 PRINTS Ubiquitin signature 120 140 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2891 Dod-Chr5 54824404 54831292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2891 109 186 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.462 1.82e-11 61.2