Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2875 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGCGGTTCAGCTTCAAACCAAGCTTCTGTTGATAATTGTTCAGCCCCAACAGCTAATGGTGGGGTGGATTTGGATTCCACAATTTTTTTGAAGAGAGCCAATGAGCTCAAAGAGGAAGGGAATCGGAGATTCCAGAACAAGGACTTTGCTGGTGCCCTTGAGCACTATGAGAATGCTCTTCGGCTCACCCCAAAATCCCACCCTGACAGAGCCGTTTTCCACAGCAATAAGGCTGCTTGTTTGATGCAAATGAAGCCCATAGATTATGAGACTGTGATTGCTGAGTGCACCATGGCCCTTCAGGTCCAGCCCCGCTTTGTCCGAGCCCTTCTTCGGAGGGCGAGGGCTTTCGAGGCTGTAGGCAAGTATGAAATGGCTGTGCAAGATGTCCAGGCCTTACTGGGAGCTGACCCTAATCACCAGGATGCTTTGGAGATTGCTCAGAGATTGAAGACTGCATTGGGGCCTCGTCAGGAGGCCCAGCAGGACCTCCAGAGTCGCCCCTCCCCTGCTGCCCTTGGCGCTTCTGCTGTCCGCGGTGCCCCAATTGCTGGTTTAGGGCCATGTTTGCCAGCCCGGCCGGTACCAAAGAAGGGGGCAAATTCAGCAGTTGCATCAGGTCTCTCGCCTAACAAGCTAGACAAGTCGCAACCAGGTTTACCAACTGAAAATGGTCCTGAGACAAAGTCCCAGATGCCAAAACTTGTGTTGAAGCCTTCAAACGGTTCTGCAAAGCAGCCTAACCTGAAAAATGAAAACCAGAAGGAGCAGCCATCTCATCTGTCAACTATTCATAGACAGTGTTTGGAGGTCACAGTTCGGTGGAGACCATTGAAGCTTGTTTATGACCATGACATTAGGCTCTCCCAGATGCCAGTGAATTGCAGTTTTAGAGTGCTAAGAGATATAGTAAGCAAAAGATTTCCTTCATCAAATTCAGTTCTGATCAAATATAAGGATAATGATGGTGATTTGGTGACTATAACGTCTACTGATGAACTAAGATTGGCAGAGTCTATTGCTGATAGCCATCTTGTAAAAGAACCTGAAGCAGATAAAAGTGATTCCATTGGGATGCTGAGACTACATATTGTTGATGTTAGTCCTGAGCAGGAGCCTCCTTTGTTGGAAGAAGAGGAAGAGAAACCTGTTGAGAGTGAAGGGATCAAGGGAGATGAGAATGGATCTCATTCTTCCCTCAGTGAATCTGTCCCGGAAGTTCCTGATGCTGAAGTTGATCAGGTGGGGAAGGATGCTCCAAAAGAAAAAGCTGGCACCACTGGAGATACTGAATGCAAAGAAGTGGAAATGGATGATTGGTTATTTGAATTTGCTCAACTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGATTTGCATGAGCTTGGGATGGAGCTGTGTTCAGAGGCACTTGAGGAAACAGTAACTAGTGAGGAGGCTCAGGAACTCTTCAACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCCGCTTTGGCGTATTTCAACTGGGGAAATGTTCACATGTGTGCAGCTAGGAAGCGAATCCCATTAGATGAGCATGCTGGGAAAGAGGTAGTGGCGGAACAGCTTCAAGTGGCTTATGATTGGGTCAAGGAAAAATATTCTTTGGCAAGACAGAAGTACGAGGAAGCACTCTTGATCAAACCAGACTTCCATGAGGGACTGTTGGCTCTTGGGCAGCAACAATTTGAAATGGCTAAACTGCACTGGTCTTTTGCACTTGCTAAGAAAATAGATCTATCAGGCTGGGATGCTACAGAGACGCTTGAACTATTTGACAGTGCGGAGAAGAAGATGAAAGCTGCAACAGATATGTGGGAAAAGCTGGAGGAACAGAGAGCAAAAGAGCTTAAGGATCCAAATGCGACAAAGAAAGAAGATGTATTGAGAAGAAGAAAGAAAAAGGAAGGTGCTACTGAAGCCGAGTCCTCCAGTGTTGGTGGTCAGGGTGATCTGTCTGCAGAAGAAGCTGCTGAGCAAGCAACTGTCATGAGATCCCAGATTCACCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTGGGAATTAGTGGTTGGAAGGAAAAGCTGGATGCTGCCACTGAGCGCTTTAAGCTTGCTGGGGCTTCTGAAGCCGATATTTCGATGGTTCTAAAGAATCACTGCTCAAATGGAGATGCAAGAGAAGGAGATGACAAAAAGATTGAGAATCCACAACCCAATAAGACTGGTGGAGTAGAAAACAATGAGGCTAATCAAGTATCTGATAAGTAA 2328 0.4652 MGKSGGRRKKGGGSASNQASVDNCSAPTANGGVDLDSTIFLKRANELKEEGNRRFQNKDFAGALEHYENALRLTPKSHPDRAVFHSNKAACLMQMKPIDYETVIAECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQALLGADPNHQDALEIAQRLKTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVPKKGANSAVASGLSPNKLDKSQPGLPTENGPETKSQMPKLVLKPSNGSAKQPNLKNENQKEQPSHLSTIHRQCLEVTVRWRPLKLVYDHDIRLSQMPVNCSFRVLRDIVSKRFPSSNSVLIKYKDNDGDLVTITSTDELRLAESIADSHLVKEPEADKSDSIGMLRLHIVDVSPEQEPPLLEEEEEKPVESEGIKGDENGSHSSLSESVPEVPDAEVDQVGKDAPKEKAGTTGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQELFNKAASKFQEVAALAYFNWGNVHMCAARKRIPLDEHAGKEVVAEQLQVAYDWVKEKYSLARQKYEEALLIKPDFHEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDATETLELFDSAEKKMKAATDMWEKLEEQRAKELKDPNATKKEDVLRRRKKKEGATEAESSSVGGQGDLSAEEAAEQATVMRSQIHLFWGNMLFERSQVECKLGISGWKEKLDAATERFKLAGASEADISMVLKNHCSNGDAREGDDKKIENPQPNKTGGVENNEANQVSDK* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2875 775 Coils Coil 612 632 - -
Dod05g2875 775 MobiDBLite consensus disorder prediction 632 678 - -
Dod05g2875 775 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
Dod05g2875 775 SUPERFAMILY CAD & PB1 domains 285 356 - -
Dod05g2875 775 SMART PB1_new 286 378 IPR000270 GO:0005515
Dod05g2875 775 MobiDBLite consensus disorder prediction 199 272 - -
Dod05g2875 775 PANTHER PROTEIN CLMP1 1 769 IPR044517 -
Dod05g2875 775 SUPERFAMILY TPR-like 42 175 IPR011990 GO:0005515
Dod05g2875 775 MobiDBLite consensus disorder prediction 379 441 - -
Dod05g2875 775 CDD PB1 289 354 - -
Dod05g2875 775 Gene3D - 288 358 - -
Dod05g2875 775 MobiDBLite consensus disorder prediction 742 756 - -
Dod05g2875 775 Gene3D Tetratricopeptide repeat domain 37 180 IPR011990 GO:0005515
Dod05g2875 775 PANTHER - 1 769 - -
Dod05g2875 775 MobiDBLite consensus disorder prediction 1 30 - -
Dod05g2875 775 ProSiteProfiles TPR repeat profile. 44 77 IPR019734 GO:0005515
Dod05g2875 775 SMART tpr_5 44 77 IPR019734 GO:0005515
Dod05g2875 775 SMART tpr_5 118 151 IPR019734 GO:0005515
Dod05g2875 775 SMART tpr_5 82 117 IPR019734 GO:0005515
Dod05g2875 775 MobiDBLite consensus disorder prediction 759 775 - -
Dod05g2875 775 MobiDBLite consensus disorder prediction 632 660 - -
Dod05g2875 775 MobiDBLite consensus disorder prediction 422 441 - -
Dod05g2875 775 MobiDBLite consensus disorder prediction 11 30 - -
Dod05g2875 775 Gene3D Tetratricopeptide repeat domain 467 629 IPR011990 GO:0005515
Dod05g2875 775 Pfam PB1 domain 286 377 IPR000270 GO:0005515
Dod05g2875 775 ProSiteProfiles PB1 domain profile. 286 378 IPR000270 GO:0005515
Dod05g2875 775 MobiDBLite consensus disorder prediction 740 775 - -
Dod05g2875 775 SUPERFAMILY TPR-like 465 588 IPR011990 GO:0005515
Dod05g2875 775 MobiDBLite consensus disorder prediction 215 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2875 Dod-Chr5 54680977 54683973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2875 34 165 Calmodulin-binding Proteins AT3G25230 27.273 1.34e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2875 - - gmx:100786963 1251.11