Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2874 ATGAGTCAACTCGGTGTCATACTGCAGGAATCGCTGCGCGCTGAAACGGAAGCAAGAACCATTCTCGGTCTCTTAACGGACCGAATGGACGGAGGCCAACGCCGAAGGAGGACTCTCAAGGAGCGCCTCAGATTCACCGGAATGGGTTGCTGCGGTGCCACCTGGGTTTTCCGTCCCGCAGCCCTAACCTTCAGGCATGCTCAAGAACAAGAACAAGCACAAGAAACTGAAACTGCTGCAGGAGGAGGAGGAACGCCACTGCCTCATCATCAGCAGCAGCAGCAACGAGAGACGAGTCCGGCTCAACATCCGAACTTGTCAGGACCCGAATGTGTGCGCCCGAGCACTTCGGGTTCGGGAATGAATCTGGCGGCGGCGTTGGCGGCGGAGCGTCAGATGCGGGGGCCGCAGGAGGTGGATGCGGGCGGCGAAGGGTCCGGCAACGACGGATCGGGGACGCCGTGGAGGGTGTCGCTGATGCGGCTGCTGGAGGAAACGGAGGGCGGCGGCGGTGGTGGTGGGGATTCTGAGGGGACGGGAAATGATTGGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATCCCATGTGGGCACACGTTTTGCAGGGTGTGTTCTCGGGAGGTGTGGTTGAACCGAGGTACCTGTCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATCTTCTGA 702 0.6011 MSQLGVILQESLRAETEARTILGLLTDRMDGGQRRRRTLKERLRFTGMGCCGATWVFRPAALTFRHAQEQEQAQETETAAGGGGTPLPHHQQQQQRETSPAQHPNLSGPECVRPSTSGSGMNLAAALAAERQMRGPQEVDAGGEGSGNDGSGTPWRVSLMRLLEETEGGGGGGGDSEGTGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGTCPLCNRSILEILDIF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2874 233 SMART ring_2 185 222 IPR001841 -
Dod05g2874 233 ProSiteProfiles Zinc finger RING-type profile. 185 223 IPR001841 -
Dod05g2874 233 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 233 - -
Dod05g2874 233 MobiDBLite consensus disorder prediction 87 122 - -
Dod05g2874 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 232 IPR013083 -
Dod05g2874 233 SUPERFAMILY RING/U-box 181 230 - -
Dod05g2874 233 Pfam Zinc finger, C3HC4 type (RING finger) 184 227 - -
Dod05g2874 233 MobiDBLite consensus disorder prediction 67 153 - -
Dod05g2874 233 CDD RING-HC 185 222 - -
Dod05g2874 233 PANTHER OS01G0917900 PROTEIN 18 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2874 Dod-Chr5 54653317 54654781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2874 21 233 C3H Transcription Factor Family AT4G22250 48.000 2.96e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2874 - - gmx:100792613 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2874 05 54653317 54654781 Dod03g0894 03 11020600 11021916 PCT