Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2869 ATGGAGGGTACTTCTAATGGCACTTCTAGTATGATGGCTTTTGGAGAGAATAGTAGTGGGCTTTGTCCAATTATGATGATGCCTTTAGTGACTTCTTATCATGCTAGTCATCATAATACAATGCTAAATCCTAATCTTACTAATCCTAATCTTACCAATCCTAATGCAAACACAAACACAAACAGTGTCTTCCTTTCTATGCCTTGCACTACTAATAACCCAAACCGCAACAACAGTGGCAGCTCCTCTATCATGCTCGAGAATAACAACCACAGCAGTAACAACACCGGGCTAGGGTATTTCATGGAGATAGACCACAATAACAACAACAACAACAACAACAATGATGGAAGCTCCTCTTCTTCCTCTTCATCCGCTGTCAAGGCTAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTAGGGGCACCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCATGTGCTTCAGCAGTGACAATGGCAGGTAACGCAGTTGGGTCAGCTTGCATAGGTGAAGATCCGGCGCTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAGCCCTTCAAGGAGGCCATGCTCTTCCTTCAGCGGATCGAGTGCCAGTTCAAGTCTCTCACGATTTCTCCTTCGGGCTTTGCTGGTAACGAAGCTAGTGATAGGAATGGATCATCTGAAGATGATGTTGATCTTGGCAACAATGTAATAGATCCGCAGGCTGAGGACCGGGAACTGAAGGGTCAGCTTCTACGCAAATACAGTGGATACCTAGGCAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGAAAACTGCCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAGTGGCCCTACCCATCTGAATCACAGAAGCTGGCTCTCGCAGAATCAACTGGTCTGGATCAGAAACAGATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAAGACATGCAATTTGTGGTGGTTGATCCAGCCCATCCACATTATTACATGGACAATGTTCTAGGAAATCCCTTCCCCATGGATCTCTCCCACACAATGCTCTGA 1146 0.4564 MEGTSNGTSSMMAFGENSSGLCPIMMMPLVTSYHASHHNTMLNPNLTNPNLTNPNANTNTNSVFLSMPCTTNNPNRNNSGSSSIMLENNNHSSNNTGLGYFMEIDHNNNNNNNNNDGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGNAVGSACIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISPSGFAGNEASDRNGSSEDDVDLGNNVIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPAHPHYYMDNVLGNPFPMDLSHTML* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2869 381 SMART KNOX1_2 125 169 IPR005540 GO:0003677|GO:0005634
Dod05g2869 381 MobiDBLite consensus disorder prediction 103 128 - -
Dod05g2869 381 SMART ELK_2 263 284 IPR005539 GO:0003677
Dod05g2869 381 Pfam KNOX1 domain 126 165 IPR005540 GO:0003677|GO:0005634
Dod05g2869 381 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 370 - -
Dod05g2869 381 CDD homeodomain 295 347 IPR001356 GO:0003677
Dod05g2869 381 Pfam KNOX2 domain 179 226 IPR005541 GO:0003677|GO:0005634
Dod05g2869 381 MobiDBLite consensus disorder prediction 234 253 - -
Dod05g2869 381 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Dod05g2869 381 SUPERFAMILY Homeodomain-like 285 360 IPR009057 -
Dod05g2869 381 Gene3D - 288 350 - -
Dod05g2869 381 SMART HOX_1 285 350 IPR001356 GO:0003677
Dod05g2869 381 ProSitePatterns 'Homeobox' domain signature. 321 344 IPR017970 GO:0000981|GO:0006355
Dod05g2869 381 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Dod05g2869 381 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Dod05g2869 381 PANTHER - 5 370 - -
Dod05g2869 381 Pfam ELK domain 263 284 IPR005539 GO:0003677
Dod05g2869 381 SMART KNOX2_2 176 227 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2869 Dod-Chr5 54589329 54594217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2869 101 381 Homeobox Transcription Factor Family AT1G62360 78.547 3.00e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod05g2869 KNOX2 7.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2869 - - gmx:547796 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2869 05 54589329 54594217 Dod03g0888 03 10915992 10921667 PCT