LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g2862	ATGTTCCCTCACAAAACACTCTTCCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCTCAATTCACTTCTCTTCTCCACCATCGTATCTAACGCCATTGATTCCATCTCACAAATCTGTCACCGTTCATTTAACGCCAAAGTCTTGATCAGCTGCATATCCATTTTCCCGGCCCAATCGCTGCATGGTTTTTGTAATCAGTTGTCTGTCCATTTCGCAGCAAGAATGGAAGTTGTTGTTGCAAGACAAGAACAGCCTGATCAACAGACTGAGGATAAGCGGGAGTTATCAAGATGCTCGAAAACTTTTGGAACTCGAAAGAGAAGGGCTCAAGAAATGGATAATTATTGCAATGAGAACCCAGAACCAGAAGGTGAAAAAGAAACTATGGGATGTTTGAAGAGGAGTACCTCAGTAAGAATGGAGGTTCCAGTTTCAAAACAAGAACAGTCAAATCAGCATATTGGCAATGATCCACGCAAGAGAGCTTGTGGAATTTTGAAAAGGAGAAAGGTTCAAGAAAATGATGTGCATGGTGTTACAAAGCCAAAGTCAGAAGGGAAAGAAGACATTCTGGTCAGTTCAAAGAGGACTACTAAACTTTCTTCCAGGAAGGGAGATGAGCCAAAGAAACTTACTGCCCCAAACAAGAAAAGGGAATTTGAAGATGATTTCTTGATTAACAATTTGGAAGAAGATGAAGAAATGCAGTTTCTTTTAAAGACAAAGCTCACCAGAAGTGCTAGAAGAATGGATACCACAATGGGTGTTGGACCAAATCCCCGGATTTGTCATCAGTGCATGAAAAGGGAAAGAACAGCTTTTGTGCCTTGTACTAAATGTCAGAAATTGTATTGTCTGCGATGCATCAACCAATGGTACCCTGATATGTCGGTAGAAGAAGTTGCTGAAAGTTGCCCATTTTGTCGTAATAATTGCAATTGCAATGTTTGTTTGTGTTCAAGAGGAATGATTAAGACACCTGACACGGACATCACTGATTATGAAAAGGTTCAGTATCTGCAATATATGATTAACTTTCTCCTTCCATATCTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAAGAGATTGAAGCCAAAATACAAGGTATTAATCTTACCTCTAGGTTTTTTGTTATTACATCAAATAAATCTCCAACTATAAACCTTTTTTTGTCAGGAAAATCATGTTGTGAGATTGAGATACCACTGAGTCTTTGTGGTGACAATGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTGTTGATCTTCATCGAAGCTGCCCCAATTGTTCTTATGAACTATGCCTTAGTTGCTGCCGAGAACTACGCAATGGAAACATTGCAACACGGGATGAGCTGAAGTTCCACTATGCGAATAGGGGTTACGATTATATGCATGGTGGTGATCCTCTTCCAGTTTCCTGTGAGTTAGAGACATCAGAGAGTCATATTCTGCTATCTTCTAGGTGGAATGCCAAGAGTGATGGAAGGATCAGTTGTGCACCAAAGGACGTGGGAGGTTGTGGTAGTTCTATATTGGAGCTGAGGTGTATCCTACCACATGGTTGGTTATCTGACTTGGAAGGTAAAGCTCTTGACATGCTAAAAATGAGGGAAGTAGAACAAACCACTCTTCAGCAAAATGAAGCAGCGTCAAGCTGCAACTTCATGAGAAGGGCAGCATTTAGAGAAGGAACGAATGATAATTACCTATACTGTCCAGTGTCAAGAGACATTTCAAAAGAAGGGCTGTCGTTTTTCCAAAAGCACTGGACTAAAGGTGAACCCATTATAGTTCGCGATGTTCTTGAACAGGGAACTGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTGTTATGTGAAAGTTTGGTTTCAGACATCAGCTCAAAAATGTCAGAAGTGAAGGCCATGGATTGCCTGGCTGGGTGTGAGGTAGAAATTAATACTCATAAGTTCTTTAAAGGTTATACGGAGGGAAGAACATACAGAAATCTCTGGCCGGAGATGCTTAAGCTAAAAGATTGGCCCCCCTCTGACAAATTTGAAGATCTTCTTCCCCGCCATTGTGATGAGTTCATTCGTTGCTTGCCATTTCAAGAGTATAGTGATCCTCGGGTTGGAATTGTCAATCTTGCTGTGAAATTGCCAGCACATGTCCTAAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGGATTAAGGAAGAACTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACAGCTGAGGTGACGTTGAGGGATGAACAGCACTCTGTCATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAAAGAACTCTGCTCTCAGCCGATGGTTGCTGAATATCCAAATGGTCGACCTTGCAAAGAAAACAAAGAACAGATGGAAGATAATGAAGTCTTAAAACTCCAAGATATGGAGAAGTGCCCTATTGAAATGAATGGAAAGATCTTACCAAATGAGGGGTCTAAGGGGGTCACTTCTCCTGTTATCTCTACAGAATATGAAACAAAGGAAACGGGTGGTGCTCTATGGGATATCTTTCGTAGAGAGGATGTTGAAAAGTTAGAAACATATCTAACAAAACACTCAAAAGAATTTAGACACACTTATTGTTCTCCAGTTGAACAGGTTGTCCATCCGATTCATGACCAATGTTTTTATTTGACCTCGGAGCACAAAAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCATGGACGTTTGAGCAGAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGCCCACACCAAGTGAGGAATCTAAAGTCATGCACAAAAGTTGCTGTAGACTTTGTCTCCCCAGAAAATGTCCACGAGTGTCTGCGTTTGACTAATGAATTCCGGCAGCTTCCAAAGAACCACAAGGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCCATTGATCAAGCTGTCAAAGACCTGAAAGCTTTAGTTAGGCGTTCTTGA	3051	0.4127	MFPHKTLFLVLSLSLSLSPSPSLNSLLFSTIVSNAIDSISQICHRSFNAKVLISCISIFPAQSLHGFCNQLSVHFAARMEVVVARQEQPDQQTEDKRELSRCSKTFGTRKRRAQEMDNYCNENPEPEGEKETMGCLKRSTSVRMEVPVSKQEQSNQHIGNDPRKRACGILKRRKVQENDVHGVTKPKSEGKEDILVSSKRTTKLSSRKGDEPKKLTAPNKKREFEDDFLINNLEEDEEMQFLLKTKLTRSARRMDTTMGVGPNPRICHQCMKRERTAFVPCTKCQKLYCLRCINQWYPDMSVEEVAESCPFCRNNCNCNVCLCSRGMIKTPDTDITDYEKVQYLQYMINFLLPYLKQICHEQSQEEEIEAKIQGINLTSRFFVITSNKSPTINLFLSGKSCCEIEIPLSLCGDNERVYCDHCATSIVDLHRSCPNCSYELCLSCCRELRNGNIATRDELKFHYANRGYDYMHGGDPLPVSCELETSESHILLSSRWNAKSDGRISCAPKDVGGCGSSILELRCILPHGWLSDLEGKALDMLKMREVEQTTLQQNEAASSCNFMRRAAFREGTNDNYLYCPVSRDISKEGLSFFQKHWTKGEPIIVRDVLEQGTGLSWEPMVMWRVLCESLVSDISSKMSEVKAMDCLAGCEVEINTHKFFKGYTEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSDPRVGIVNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLRDEQHSVISKLKEAHKAQDEKELCSQPMVAEYPNGRPCKENKEQMEDNEVLKLQDMEKCPIEMNGKILPNEGSKGVTSPVISTEYETKETGGALWDIFRREDVEKLETYLTKHSKEFRHTYCSPVEQVVHPIHDQCFYLTSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDQAVKDLKALVRRS*	1017

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g2862	1016	Gene3D	Cupin	573	988	-	-
	Dod05g2862	1016	SMART	cupin_9	692	979	IPR003347	-
	Dod05g2862	1016	Pfam	JmjC domain, hydroxylase	859	962	IPR003347	-
	Dod05g2862	1016	ProSiteProfiles	Zinc finger RING-type profile.	267	313	IPR001841	-
	Dod05g2862	1016	PANTHER	LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE	81	377	-	-
	Dod05g2862	1016	PANTHER	LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE	392	1015	-	-
	Dod05g2862	1016	MobiDBLite	consensus disorder prediction	177	216	-	-
	Dod05g2862	1016	ProSiteProfiles	JmjC domain profile.	711	979	IPR003347	-
	Dod05g2862	1016	MobiDBLite	consensus disorder prediction	144	163	-	-
	Dod05g2862	1016	SUPERFAMILY	Clavaminate synthase-like	578	1010	-	-
	Dod05g2862	1016	CDD	cupin_RmlC-like	903	963	-	-
	Dod05g2862	1016	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	81	377	IPR045109	GO:0032454\|GO:0033169
	Dod05g2862	1016	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	392	1015	IPR045109	GO:0032454\|GO:0033169

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g2862	Dod-Chr5	54525631	54531364	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Dod05g2862		JmjC	1.1e-14	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g2862	K15601		K21989	gmx:100797860	1277.69