Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2857 ATGGCTACCTTAACCACTTTCCTAGTGCTCTCATGCTTGTTGGTATCTAACTTGGCTTTAACCCTGAGCGAAGAAGATCATTCAACAAACAATGATTACAACACCCTGCACTCCATTCCAAGCTACATCCCCGATCCCGAGAGTGCTAAGAACGTGATCATGAACAAAATAGACTCATGCTGGGGAGCCAAAGAAGATTGGGCATCAAACCGCCATGCCTTGGCTGATTGCGCTATAGGCTTTGGTGCAGAAGCCATTGGAGGTAAGTATGGTGCAATATACCAAGTCACTGATCCATCCGATGACCCTATAAACCCCAAACAAGGGACACTTCGTTATGGGGTTATCCAAACACAGCCCCTTTGGATAACTTTTGCAAAGGACATGGTTATCAAGCTCAAGAACGAGCTTATGGTGAACAGCTACAAGACCATTGATGGGAGAGGAGCCAAGGTTGAGATTGCAAATGGGCCTTGCATCACAATACAAGATGTTAGCCATGTCATTGTGCATGGCATTAGCATTCATGATTGCAAACCAGGTGAAGCTGCCATGGTGAGGAGCACCCCTGACCATGTTGGGTATCGTGAAGGCTCTGATGGAGACGCTATTACTATATTTGCTTCCTCCAATATCTGGATTGATCATTGCCTCTTGGCTCATTGCACTGATGGTCTTGTTGATGTTACTCATGCCTCAACTGCTGTCACCATCTCCAACAACTACTTCACCCAGCATGACAAAGTAATGCTGCTAGGACACAACGATGAATATTCTGCGGATAGAATAATGAAAGTGACTGTAGCCTTCAATCGCTTTGCCAGTGGCCTTATACAAAGAATGCCGAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACCAGTATGATGAGTGGCTCATGTATGCCATTGGCGGCAGTGCTGATCCGACCATTTTCAGTGAAGGCAACTACTTCATAGCTTCAAATGATTCAGCAGCAAAACAGGTTACCAAGAGGGAAACCAGCGAAAATTGGAAAAACTGGAAATGGAGGAGTTTTGGGGATCAATTCATGAATGGTGCTTACTTTGTGCCTTCGGGATATGGAAGCTGTGCTCCATTATATTCAACTGCGGGAACTTTTCTAGCGGCCACGGCATCTATGGTGCCTTCATTAACATCCAATGCAGGTCCACTGGAATGTGTCGTTGGAAAAGCATGTTGA 1206 0.4552 MATLTTFLVLSCLLVSNLALTLSEEDHSTNNDYNTLHSIPSYIPDPESAKNVIMNKIDSCWGAKEDWASNRHALADCAIGFGAEAIGGKYGAIYQVTDPSDDPINPKQGTLRYGVIQTQPLWITFAKDMVIKLKNELMVNSYKTIDGRGAKVEIANGPCITIQDVSHVIVHGISIHDCKPGEAAMVRSTPDHVGYREGSDGDAITIFASSNIWIDHCLLAHCTDGLVDVTHASTAVTISNNYFTQHDKVMLLGHNDEYSADRIMKVTVAFNRFASGLIQRMPRVRFGYAHVVNNQYDEWLMYAIGGSADPTIFSEGNYFIASNDSAAKQVTKRETSENWKNWKWRSFGDQFMNGAYFVPSGYGSCAPLYSTAGTFLAATASMVPSLTSNAGPLECVVGKAC* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2857 401 SMART amb_all 128 325 IPR002022 -
Dod05g2857 401 Pfam Pectate lyase 133 319 IPR002022 -
Dod05g2857 401 PANTHER PECTATE LYASE 20 400 - -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Dod05g2857 401 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Dod05g2857 401 Gene3D - 54 394 IPR012334 -
Dod05g2857 401 PANTHER PECTATE LYASE 18-RELATED 20 400 IPR045032 GO:0030570
Dod05g2857 401 SUPERFAMILY Pectin lyase-like 54 392 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2857 Dod-Chr5 54504836 54506777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2857 6 401 Polysaccharide Lyase AT4G22080 66.414 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2857 K01728 - gmx:100803229 647.506