Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2856 ATGGTCACCTCAACCCCACTCCTCTTGGCTTCATGCTTCTTACTACACCTTGCTTATGCCTTTTCAACAGACAACACTCCCCAACCTGTCTCGAAGTACATCCCCAAGACTTTTAAGAAACCATTCCTCAACACCATAGACTCTTGCTGGCGGGCCAAATCAAATTGGGCATCAAATCGCCATGCCTTGGCTGATTGTGCAATTGGCTTTGGTGCAGATGCCATTGGAGGCAAGTATGGGGCTTTATATGTAGTGACTGATGCCTCCGATGACCCTGCAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAACGGAGCCCCTTTGGATCATTTTTAACAAAGACATGGTTATTACCCTTAAGAATGAGCTCATAATGAATAGCTACAAGACCATTGATGGGAGGGGTGCTAAAGTGGAGATTGTAAATGGGCCTTGCATCACAATACAAGGTGTTAGCCATGTCATTATACATGGAATTAGCATCCATGATTGTAAGCCGGGCAAGGCTGGCCTCGTGAGGAGTACTCCTGATCATGTTGGCCATCGACAAGGTTCAGATGGTGATGCCATTAGTATATTTTCTTCCTCAAATATTTGGGTTGATCGTTGCTTCTTGGCTCGTTGCACCGATGGCCTTATCGACATTATTCATGCTTCAACCGCCATTACTATTTCTAACAATTATTTCACCCAGCATGACAAAGTTATGCTTTTAGGACACAACGACCAATACACGGCAGATAAAATAATGCGGGTAACAATAGCCTTCAACCGGTTTGCTAGTGGCTTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCGCACGTGGTCAACAACAAATACGATGAGTGGAAAATGTATTCTGTAGGCGGCAGTTCTAACCCAACCATTTTAAGCGAAGGGAACTTTTATATAGCACCAAATGACGCAAATGCCAAACAGGTTACCAAGAGGGGAGCGAAGGGAAACTGGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGTATTCCTAAATGGTGCTTATTTTGTACCATCTGGGTATGGAAGTTGTGCCCCAAATTATTCACCTACTCAATCTTTCACTGCTGTTCCAGCCTACATGGTGCCCGCAATAACTCTCAATGCAGGTCCCTTGAGTTGCCTTGTTGGGATAGCGTGTTGA 1173 0.4467 MVTSTPLLLASCFLLHLAYAFSTDNTPQPVSKYIPKTFKKPFLNTIDSCWRAKSNWASNRHALADCAIGFGADAIGGKYGALYVVTDASDDPANPKPGTLRYGAIQTEPLWIIFNKDMVITLKNELIMNSYKTIDGRGAKVEIVNGPCITIQGVSHVIIHGISIHDCKPGKAGLVRSTPDHVGHRQGSDGDAISIFSSSNIWVDRCFLARCTDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNKYDEWKMYSVGGSSNPTILSEGNFYIAPNDANAKQVTKRGAKGNWKSWKWRSSKDVFLNGAYFVPSGYGSCAPNYSPTQSFTAVPAYMVPAITLNAGPLSCLVGIAC* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2856 390 SUPERFAMILY Pectin lyase-like 64 390 IPR011050 -
Dod05g2856 390 Pfam Pectate lyase 125 308 IPR002022 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Dod05g2856 390 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Dod05g2856 390 Gene3D - 43 383 IPR012334 -
Dod05g2856 390 PANTHER PECTATE LYASE 3 389 - -
Dod05g2856 390 SMART amb_all 117 314 IPR002022 -
Dod05g2856 390 PANTHER PECTATE LYASE 18-RELATED 3 389 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2856 Dod-Chr5 54500430 54502039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2856 7 390 Polysaccharide Lyase AT1G11920 65.455 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2856 K01728 - gmx:100807483 673.315