Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2817 ATGATGCAGCCTGGACATGGGATGGCTCCGCCCAGCATGGCCCAACAGCCCAACCAGCAGCAATACCAGCAGCAACCGCCGCCGTACATGATGATGCCTCCCCAGGCCCAGCCTCAGCCCCAGCCGGGCCCCATGTGGGCCCCATCGGCCCAGTCGGCGGCCCCTCCCCAGCCCGCCAGTGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTACCTCTACACCTGCTTCGCTCACACCGGCGAGGTGGCATCTGTTAAAGTTATTAGGAATAAGCAAACTAATCAATCAGAGGGTTATGGTTTTATTGAGTTTACAAACCGCGCTGCTGCAGAAAGAATACTGCAGACGTACAATGGCACCATTATGCCAAATGGAGGGCAGAACTTCAGGTTGAACTGGGCAACCTTTGGTGCGGGTGAGAGGAGCCATGATGATTCTCCCGATTACACCATATTTGTTGGAGACTTGGCTGTAGATGTTACTGACTACCACCTGCAGGAGACATTTAGGGCTAGGTACTCCTCGGTTAAGGGGGCCAAAGTTGTGATTGACAGGCTTACTGGCCGGACGAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAGCAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGACCCATGCGGATTGGACCAGCCTCTAATAAAAATACTGCCACCCAATCTAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTGTTTTTGTCGGCAATTTGGATCCTAATGTTACTGATGATCATCTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTTCATGTTAAGATTCCAACCGGCAAGAGATGTGGGTTTGTGCAATTTGCAGACAGGAGTTGTGCAGAAGAGGCACTGCGGGTTTTAAATGGAACACTTTTGGGTGGACAAAATGTTCGGCTTTCGTGGGGGCGAAGTCCTTCAAACAAACAGACTCAACCAGAACCAAACCAGTGGAATGGTAGTGGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCCACCGGACAGGACCCCAACGTGTATGGCAGCTATCCGGGATATGCAAATTACCAACCTCCTCAACAGCAGCAGCAAATGGGATACAGCTGA 1194 0.4983 MMQPGHGMAPPSMAQQPNQQQYQQQPPPYMMMPPQAQPQPQPGPMWAPSAQSAAPPQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTNQSEGYGFIEFTNRAAAERILQTYNGTIMPNGGQNFRLNWATFGAGERSHDDSPDYTIFVGDLAVDVTDYHLQETFRARYSSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNTATQSKASYQNPQGAQNENDPNNTTVFVGNLDPNVTDDHLRQVFGQYGELVHVKIPTGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQPEPNQWNGSGGYYGYAQGYENYGYAPTGQDPNVYGSYPGYANYQPPQQQQQMGYS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2817 397 Gene3D - 157 233 IPR012677 -
Dod05g2817 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 335 IPR000504 GO:0003723
Dod05g2817 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Dod05g2817 397 MobiDBLite consensus disorder prediction 229 262 - -
Dod05g2817 397 MobiDBLite consensus disorder prediction 383 397 - -
Dod05g2817 397 MobiDBLite consensus disorder prediction 232 262 - -
Dod05g2817 397 MobiDBLite consensus disorder prediction 377 397 - -
Dod05g2817 397 CDD RRM1_SECp43_like 66 146 - -
Dod05g2817 397 Gene3D - 8 152 IPR012677 -
Dod05g2817 397 MobiDBLite consensus disorder prediction 12 26 - -
Dod05g2817 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Dod05g2817 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Dod05g2817 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Dod05g2817 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 328 IPR000504 GO:0003723
Dod05g2817 397 CDD RRM2_SECp43_like 157 236 - -
Dod05g2817 397 MobiDBLite consensus disorder prediction 27 51 - -
Dod05g2817 397 CDD RRM3_NGR1_NAM8_like 262 333 - -
Dod05g2817 397 SUPERFAMILY RNA-binding domain, RBD 28 146 IPR035979 GO:0003676
Dod05g2817 397 SUPERFAMILY RNA-binding domain, RBD 151 245 IPR035979 GO:0003676
Dod05g2817 397 SMART rrm1_1 66 141 IPR000504 GO:0003723
Dod05g2817 397 SMART rrm1_1 264 331 IPR000504 GO:0003723
Dod05g2817 397 SMART rrm1_1 159 233 IPR000504 GO:0003723
Dod05g2817 397 MobiDBLite consensus disorder prediction 1 59 - -
Dod05g2817 397 SUPERFAMILY RNA-binding domain, RBD 248 360 IPR035979 GO:0003676
Dod05g2817 397 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 15 394 - -
Dod05g2817 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 394 - -
Dod05g2817 397 Gene3D - 236 369 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2817 Dod-Chr5 54179553 54183565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2817 44 342 Eukaryotic Initiation Factors Gene Family AT4G34110 28.115 6.61e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2817 - - gmx:100796848 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2817 05 54179553 54183565 Dod03g0833 03 10303017 10303845 PCT