Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2804 ATGCTTGCTTGCTTGTTCCATTCCATGGACACTCACACTTTCACTCTTTCGGTCTCGCCTCTCTCAACTTTGTGTGTTCCTTCTTCCTCTCAAAACCCAACTTGTTTTCTCCCTCCTCATTCACATAACCTTAACCGAACCATCTACCCTCCTCGTTGCTCTCTCTCAAACTTCAGAACCCAGCAAGCACTTACCAACCTTTCTCCCATAACCCTTCAAGCCGATGATGATGATGATGCAGTGAACAACACTCCCACTTTGAGAGAACTATGCCAACCTCATGTTCCCAGCCATGTATTGCAAAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGGGAGGCATTGCCTTATCTCTTTTCCGGGCGTGACTGTATACTTCATGCTCAGACGGGTTCTGGGAAGACACTTACATACCTCCTTTTGATATATTCGATCATCAACTCTGCAAAATCTGCTGTGCAAGCACTAGTTCTGGTGCCCACCCGTGAACTTGGCATGCAAGTCACTAAAGTTGCTAGGATGTTTGCTGCAAAGCCAGCTGGAGTTGAGGGGCAGCAGAAGTCATGTACCATCATGGCTCTATTAGATGGAGGAACATTGAGAAGACACAAGACTTGGTTAAAGGCAGAGCCTCCAACAATAGTTGTTGCAACAGTCAGCAGTTTATGCCAAATGCTTGAAAGACAAATTTTCTTGCTTGAATCTGTGAGGGTGCTGATAGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTCAGTTATCTTCGGAAGCTTTTGACTTCATATTCATCCTGCAATAACCGTCAGACAGTTTTTGCCAGTGCGTCTATACCACAGCACAGACGCTTTCTTCATGACTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGATACATATTCATGTCAGCCCAGTGGAGCCCATGCCATCTCGCCTGTGTCATAGATTTGTAATATGCAATACTAAACAGAAACTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTAGCAGTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAGGGCTGGAAATGCTCCACCGACTTCCATTGTCATTGACTTTCTGAAGACATCATATCAAGGGCCTTTAGATATTGTCCTTCTCGAAGATGATATGAATTTCAATTCACGAGCAGTTTCACTGTTGGAAGTTCGAAAAGGAGGTGGTTGTCTCCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGATCTTCCTGAAATGTCTCACATTTACAACTTCGATTTGCCAAATACTGCAGTGGATTATCTTCATCGAGCAGGGAGGACATGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCAGCATTATAGCTCCAGCAGAGCGGTTTGTTCTGCAGAAATATGAAAATGAATTGATGTTTAATTGTGAAGAGCTTATTCCATGA 1464 0.4324 MLACLFHSMDTHTFTLSVSPLSTLCVPSSSQNPTCFLPPHSHNLNRTIYPPRCSLSNFRTQQALTNLSPITLQADDDDDAVNNTPTLRELCQPHVPSHVLQRMEEIGYVMPTDVQREALPYLFSGRDCILHAQTGSGKTLTYLLLIYSIINSAKSAVQALVLVPTRELGMQVTKVARMFAAKPAGVEGQQKSCTIMALLDGGTLRRHKTWLKAEPPTIVVATVSSLCQMLERQIFLLESVRVLIVDEVDFIFNSSKQVSYLRKLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFVICNTKQKLQTLLSLIQSDAPESSSIFVGEQSEKSKRAGNAPPTSIVIDFLKTSYQGPLDIVLLEDDMNFNSRAVSLLEVRKGGGCLLVATDIAARGVDLPEMSHIYNFDLPNTAVDYLHRAGRTCRKPFSDMKCTVTSIIAPAERFVLQKYENELMFNCEELIP* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2804 487 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 486 - -
Dod05g2804 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 453 IPR027417 -
Dod05g2804 487 SMART helicmild6 367 451 IPR001650 -
Dod05g2804 487 CDD DEADc 99 294 - -
Dod05g2804 487 Pfam DEAD/DEAH box helicase 112 285 IPR011545 GO:0003676|GO:0005524
Dod05g2804 487 Pfam Helicase conserved C-terminal domain 330 449 IPR001650 -
Dod05g2804 487 CDD SF2_C_DEAD 320 449 - -
Dod05g2804 487 SMART ultradead3 107 317 IPR014001 -
Dod05g2804 487 Gene3D - 55 297 IPR027417 -
Dod05g2804 487 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 487 IPR001650 -
Dod05g2804 487 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 301 IPR014001 -
Dod05g2804 487 Gene3D - 315 486 IPR027417 -
Dod05g2804 487 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 53 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2804 Dod-Chr5 54111718 54116792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2804 107 476 Eukaryotic Initiation Factors Gene Family AT1G72730 27.105 7.63e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2804 - - ahf:112763379 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2804 05 54111718 54116792 Dod05g2804 05 54111718 54116792 ECH