Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2803 ATGGCTACTTTCACCACCTCCTCCTCTTCTTCCTCTTCCCCTCCTCCGTCTCTCTCACACATTCCACCCATTTCAGCTCCTTCGTCTACTGCCGCATTCGACGACTGCTCCGACGATGCCTGCAGCATTTGTCTGGAGCCCTTCACCACTCATGACCCCGCCACTACTACCAGTTGCAAACATGAATATCATCTGCACTGTATTATTGAATGGTCTCAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATTACTTAGCTTGAAAGACCCTACCAGCCAGGAGCTTCTAACTGCAGTGGAGGCTGAAAAACGCTTAAGATCAAGAAATGTATATTCATCTGCATTCACTAATTCTCGTAGCACCCTTGAACGACGTAATGATGTTCATGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAACTTATGCAGCACCTAGTTGCTGCTGGAAGTAGAGCCCGTTATGTTCACAGACGGGAAAGGCAGAGATATTCTGGAGCAGGTCCATCAGAGGCTTTTGTTTTTAACCCCTCTATGCCTGCTTCTGGGGTGCAACCAACACTTGCAACTTCACTGTCTGGGGGTAGTTCACCAACTTCTGGTGTACCATCTTCTCACATTCAACCTCCAACATCTGCTTTTTCTCCTGTTGACTCGGTTTCAAGAAATACTGTTTCTGAGGATGATGATGCCCCTTTCAAACCCAGCCGGCCACCACTTGAGAGTGCAAGGAGACTAAACACTCCTGAGATGTTTTCCTTCCCTGAGTCCATCAAATCAAAAATTTCTGCAGCTTCAGCCAGATATAAGGAGTCAATCTCAAAAAGTACACGAGGTCTTAAAGAGAAGTTAATTGCACGTAATGCCTCAGTGAAGGAGCTAAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGTGTTGCACGGATCATTGAACGTCTTGATCTTACCTCAAAACGGTCTACTACTTCAGGCATCCCTGTGAAAGGGAAGTCTGCGCAAGAGAATAATGGTATTGGGCAGGCCCCTAGTGATGATAGTGCAGTTTTGGTTTGTCATGTTAGTTCAGACAGTCCCGCACTGGTTTCTAACATAGTTGCTGGTGAAGTGGGAATTCCTCCTCCTTCGAGTGTTCAGAGTGGACATGATGCTGTGAAGACTTAA 1173 0.4612 MATFTTSSSSSSSPPPSLSHIPPISAPSSTAAFDDCSDDACSICLEPFTTHDPATTTSCKHEYHLHCIIEWSQRSKECPICWQLLSLKDPTSQELLTAVEAEKRLRSRNVYSSAFTNSRSTLERRNDVHDDSCSDDSDFDEQLMQHLVAAGSRARYVHRRERQRYSGAGPSEAFVFNPSMPASGVQPTLATSLSGGSSPTSGVPSSHIQPPTSAFSPVDSVSRNTVSEDDDAPFKPSRPPLESARRLNTPEMFSFPESIKSKISAASARYKESISKSTRGLKEKLIARNASVKELSKGVQREMNAGIAGVARIIERLDLTSKRSTTSGIPVKGKSAQENNGIGQAPSDDSAVLVCHVSSDSPALVSNIVAGEVGIPPPSSVQSGHDAVKT* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2803 390 Pfam Ring finger domain 40 81 IPR001841 -
Dod05g2803 390 MobiDBLite consensus disorder prediction 185 223 - -
Dod05g2803 390 MobiDBLite consensus disorder prediction 1 15 - -
Dod05g2803 390 SUPERFAMILY RING/U-box 33 89 - -
Dod05g2803 390 MobiDBLite consensus disorder prediction 324 347 - -
Dod05g2803 390 MobiDBLite consensus disorder prediction 324 346 - -
Dod05g2803 390 SMART ring_2 41 81 IPR001841 -
Dod05g2803 390 MobiDBLite consensus disorder prediction 1 24 - -
Dod05g2803 390 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Dod05g2803 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 350 - -
Dod05g2803 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 97 IPR013083 -
Dod05g2803 390 MobiDBLite consensus disorder prediction 185 253 - -
Dod05g2803 390 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2803 Dod-Chr5 54107432 54110460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2803 38 81 C3H Transcription Factor Family AT4G00335 50.000 8.32e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2803 K19043 - gmx:100775754 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2803 05 54107432 54110460 Dod05g2803 05 54107432 54110460 ECH