Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2791 ATGGGAATTTCCTGGAGCAACAGTAATAGAAGAAGAAACAGTTACCCACCTCCACATCTGCCACCACCCCATTACTATTACTCTGCGGACACTCATCCTCATCCTCCGTTGCCACCGCCACCGCCTCCGCCGCAAGGTTACTACTTCACCTCAACAAACCCTTCCGCCGCCGGCTATGTGGGCCCACATCCTCTGCCACCACCACCACCACCACATCCTCAGAGCCATTCCTTCTATTACTCAAATGGGTACACCAACACCAGCGCTCCCATGGTGGGTCGCCTTCACTACCACCCTTTCTATGCAAATCAGGGTGCTGCTTCTTCTATGTGGAACCCTGTTACTGTCAGTGTTCGCCCCCAAGCTGGTCCTGCCGCCGCACCGCCACCGCCCTATGTTGACCACCAAACCACCAAGAAGATAAGGAATGATGTCAACTTGCATAAGGACACTCTGCGCCTTGAGGTTGATGAGCAAAACCCTGATCACCACTTGGTTTCTTTCGTCTTCGATGCCCTCTTTGATGGCAGCATTACTATCTTCTACTTAGCCAAAGAAGAAGAAAAATGTAGGTTTATTCCACTATTTCCTGATGCATTTGAGCCAATCACAGTCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTCGTCAGCCTTCAGGAACAGGCATTGACCTTGGTTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTAGAGAAGATGTATTCCCCCTTGTAATATGTGCTGAAACAAGTTTGAGAACTCCTTCAGCAGATGAAACTCCTGGTGATTCCATGATAGGCGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAAGCAATGGTAGTGGTTCTTTTCAGGTGAAAGTAGCTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCAACAGAAGCAGATTTTGATGATAATGATCCTGGGAAGGAATGTGTAATATGCATGACTGAACCAAAGGACACTGCTGTCCTACCTTGCCGACATATGTGTATGTGCAATGAGTGTGCCAAAGCTTTGCGGTTTCAATCAAATAAATGCCCTATATGCCGCCAACCTATTGAGGAACTTATAGAGATCAAGATAAACGATGGTGACCAATGA 1158 0.4706 MGISWSNSNRRRNSYPPPHLPPPHYYYSADTHPHPPLPPPPPPPQGYYFTSTNPSAAGYVGPHPLPPPPPPHPQSHSFYYSNGYTNTSAPMVGRLHYHPFYANQGAASSMWNPVTVSVRPQAGPAAAPPPPYVDHQTTKKIRNDVNLHKDTLRLEVDEQNPDHHLVSFVFDALFDGSITIFYLAKEEEKCRFIPLFPDAFEPITVPFQKGVGQKFRQPSGTGIDLGFFELDDLSKPSPREDVFPLVICAETSLRTPSADETPGDSMIGASPHMQITQAVLEKSNGSGSFQVKVARQILWIDDVRYELRELYGIGSSTEADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCNECAKALRFQSNKCPICRQPIEELIEIKINDGDQ* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2791 385 MobiDBLite consensus disorder prediction 60 75 - -
Dod05g2791 385 SMART ring_2 330 368 IPR001841 -
Dod05g2791 385 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 329 369 IPR045195 -
Dod05g2791 385 PANTHER MAHOGUNIN 1 384 IPR045194 GO:0061630
Dod05g2791 385 MobiDBLite consensus disorder prediction 1 79 - -
Dod05g2791 385 Pfam Zinc finger, C3HC4 type (RING finger) 328 374 - -
Dod05g2791 385 ProSiteProfiles Zinc finger RING-type profile. 330 369 IPR001841 -
Dod05g2791 385 SUPERFAMILY RING/U-box 329 375 - -
Dod05g2791 385 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 384 - -
Dod05g2791 385 MobiDBLite consensus disorder prediction 15 48 - -
Dod05g2791 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 379 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2791 Dod-Chr5 54006341 54010580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2791 93 385 C3H Transcription Factor Family AT3G06140 58.609 1.03e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2791 - - adu:107465273 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2791 05 54006341 54010580 Dod05g2791 05 54006341 54010580 ECH