Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2744 ATGCCGAAGTATCGAAGCCGCAGCAGAAGCTACAGCCCTCGCCGCCGGAGCAGAACCCCGCCGCGCGGGCGCAAGCGCCACAACGATGATCGCCACGCTGACACCAGGTCCTACAGGGACCGCCGATCCCCTCCCCCTTCTGGCTTGCTCGTTCGTAATCTTCCCCTTGACGCAAGGCCTGAGGATCTTAGGGTCCCGTTCGAGCGCTATGGTCCTGTGAAGGACGTTTATCTTCCTAAGAATTACTACACCGGTGAGCCTCGGGGATTTGGGTTTGTGAAGTATCGTTATGGTGAAGACGCAGTTGAGGCAAAGCAACAACTTAATCATACTATCATTGGTGGGCGTGAAATAAGGATTGTGTTTGCTGAGGAAAACAGGAAGACCCCTCAGGAGATGCGTGTTATTTCTCGTGGAAGTGCTCAATATGGAGGTGGCAGAAGGAGGAATCGCTCAAGGTCCCCAAGACATAGATATCGTTCTTACTCTAGGTCTCCAACGCCAGCTCGGGATGATTCAAGGGATGGCAGGGGTAGGGATGTTTATTATTCTCCTGAGCGATCGAGATCAAGATCTAGATCTAGATCTTATTCTAGGTCTCGCTCTCCTAGTGGGGGGAAGGACTACAGGAGGCCTCCACATCTCAGGGAGAATGGCCGTAGTCCTAATGAGAAGAGGGATCGTGCACCTAGCAGATCAGAGAGTCCCAGGGGTAATGATCGCAGCCCTTCTAGGTCTCGATTCACAGTCTTACAGTCCGCACTGATTAGCCATCCAGGATGA 783 0.5287 MPKYRSRSRSYSPRRRSRTPPRGRKRHNDDRHADTRSYRDRRSPPPSGLLVRNLPLDARPEDLRVPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAVEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRVISRGSAQYGGGRRRNRSRSPRHRYRSYSRSPTPARDDSRDGRGRDVYYSPERSRSRSRSRSYSRSRSPSGGKDYRRPPHLRENGRSPNEKRDRAPSRSESPRGNDRSPSRSRFTVLQSALISHPG* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2744 260 MobiDBLite consensus disorder prediction 23 41 - -
Dod05g2744 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Dod05g2744 260 SUPERFAMILY RNA-binding domain, RBD 40 154 IPR035979 GO:0003676
Dod05g2744 260 MobiDBLite consensus disorder prediction 128 260 - -
Dod05g2744 260 MobiDBLite consensus disorder prediction 204 241 - -
Dod05g2744 260 MobiDBLite consensus disorder prediction 164 193 - -
Dod05g2744 260 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 8 237 - -
Dod05g2744 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Dod05g2744 260 SMART rrm1_1 48 121 IPR000504 GO:0003723
Dod05g2744 260 MobiDBLite consensus disorder prediction 1 53 - -
Dod05g2744 260 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 237 - -
Dod05g2744 260 MobiDBLite consensus disorder prediction 1 22 - -
Dod05g2744 260 SMART rrm2_1 48 121 IPR003954 GO:0003676
Dod05g2744 260 Gene3D - 2 135 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2744 Dod-Chr5 53519123 53522986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2744 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.78e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2744 K12900 - gmx:100788749 351.288