Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2738 ATGGCATCTTCACAGAATGTTGAGTTGGAGGCAGCCAAGTTTCTGCATAAACTTATTCAGGATTCTACAGATGAGCCAGCCAAGTTGGCTACTAAACTCTATGTGATACTGCAACATATGAAATCAAGTGGGAAGGAAAATTCAATGCCATATCAAGTGATATCAAGGGCGATGGAGACCGTCATCAACCAACATGGTCTTGATATTGAAGCATTGAAGTCATCACGCCTTCCTTTGACTGGGGGTGCTCAAATAGGCTCTTCTTCACAGGCAGTGGGTTTTACAAAGGATTCCAGATTGGGCTTGGCTGAAAATGAGATGTCGAAATTGGACACTTTAGCTTCTGGCCGGCCACCAGTTGCCCCAACTGGTGGAACTCCTGATTATTATCAAGGATCTGTGGCTCAGAGGAGTAGTCAGTCTTTTGATCAAGGAAGTCCATCTAGTTTGGACTCTAGGTCTGCCAACTCGCAGTCACAAGACAGACGTGATACTGCCAATTGGGACAAACAGGCGAATCAAAAGGACGGTAAGAAAGCTGCCCCAAAGAGAAAGAGGGGAGATACGTCATCACCCGTGGAACTGCGTGTTGACAGTCCTTGTCAGCTGGATCCTTGCAGTACTGGTGGTAATGCAAGGAAGGCGAAACTGACCAAGGCTGAACCATCAGATGGTCTTCCAGTTAAAGCTGGTGAACTGACCAACTTTAACATGGTTCCAAGCAGCAGTCAAATGGAGAATTTTCCAACTTTATCTGGTAGCATGAGAACAATGCTTAGGGCAAACCAAGAAGGTGCTTATGCTAAGGTTCACAGAGGGATGATGGTTCCTACTAGTGCATCTCCAATGGCCGAACCAGTTTTCTCAAGTTCAATGCAATATGGTGGTGCACTTGATCGTGATGGGGGAAGTTTGTCTACTTTGGCTGATGGACATAAAATAGCTCAGATGGGCAGGCAAAGTAGTGGCTCAGAAATGACAATGCTTAGACAAGGTGTTCCTTCCTGGGATACTGGGAAATCTGCACCTACATCGTCTGCCATGCCTTTCAAAGAACAACAGTTAAAACAGCTTCGAGCTCAGTGCCTTGTTTTTCTGGCATTTAGAAATGGTTTGCCGCCAAAGAAACTACATCTTGAAATTGCTCTTGGAACTACCTTTTCTAGAGAAGGTAACACATCTGGGGTTATGACACAATTTGGTGGTCTGAGCAATGTGAGAGAAACTGATAAAACCCCTTCAGGGTCCTCTTCTGCTGGTAAAATTCTGGAGCCTGACTCTTTGTTGAAGGGAACTGAGAGCCCAAGAATGATGGAGGACAAAGGTAACCCACATTCTGACACCCAGATACTAGCAGAAGAAAGGAAACATCTAGCCACGAAAAGAGGAGAGGTTGAAAGACGAATTCAGGAAAGGGTGGCTGCACAAGCTTCTTCAGCTACTTCATCTCAGCAGCAAGATTCTTCAAGTACTAGGGGTGCTGGAGTTGTTAAGAATCATTTGGATGAAGTTGACAATGGTAATGTTCAAGTTGGAAGGTCTAACCAACCTTGTGGCATAGGCCCGAATAGCTGGACTGGATTTGCTGCTCATAAGGAGGTTTCAAAGGGGACTCCACAGATCTCTGCTATTCAGCATGAATTGGCTATAGAAAGAAGAGACAATGTTCCCAGTCAGTTTCAAAATGTTAACGTTTCCATGATGAAGGATGGAAATGTGATCACAAAACACATTTCTCTAGATGGGTTCAAAACAGTTCCGGTTGATGATGCATCTAAACATGGCGTCTGTTCTGCGACAGAGCAAGAAGGGAATGAGAGATTTGCATCAGCTGATTTGCCATGTTCTCCAAAATGTACAATGTCAGAGAGATGGATTATGGATCAGCAGAAGAAAAGGCTTCTAGATGAGCAAAACTGGGTTCAGAAACAGCAGAAAACAAGGCAAAGGATGGCTACCTGTTTTCTCAAGTTAAAGGAAAATGTGAACTCATCTGAAGATATTTCTGCCAAAACAAAAACTGTCATAGAGTTGAAAAAACTTCAACTCTTAGATATCCAACGTCGTCTCCGTAGTGGTTTTCTCAATGATTTTTTCAAACCAATCACAACTGAGATGGAACATTTGAAATCACTTAAGAAGCATAGGCATGGTAGGAGGGTCAAACAACTTGAAAAGTTTGAGCAGAAAATGAGGGAAGAGCGCCAGAAACGAATTCGTGAGAGGCAGAAGGAGTTTTTCGGTGAGATAGAAGTTCACAAGGAAAAACTTGATGATGTATTCAAAATCAAGAGGGAACGGTGGAAGGTTTTCAATAGATATGTGAAAGAGTTCCATAAAAGAAAAGAACGTATACATCGTGAGAAGATTGATAGAATCCAGAGGGAAAAGATTAATTTGCTGAAAATAAATGATGTGGAGGGTTATCTGCGAATGGTGCAGGATGCAAAATCAGATCGCGTGAAGCAACTTCTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGATCCAAGCTACAGGCAGCAAAGGCTGCAGCAGGACATTTTGGGCAAGATGTTGATGAGGGAGGAAGTCGTAGTTTTCTTGAGAATAGTGAAACTACTTTTGAAAATGAGGATGAGAGTGACCAGGCAAAGCATTATATGGAAAGTAATGAGAAGTATTATATGATGGCTCACAGTATAAAGGAGAGCATTGCAGAGCAGCCATCTTGTTTGCAGGGCGGAAAATTGAGGGAGTATCAAATGAATGGCCTGAGGTGGCTGGTTTCGCTATACAACAATCATTTAAATGGAATCCTTGCTGATGAAATGGGGCTGGGTAAAACAGTCCAGGTCATTTCTCTAATTTGCTACCTGATGGAAACAAAAAATGACAGAGGACCATTTCTTGTGGTTGTGCCTTCTTCAGTTCTTCCTGGTTGGGAGTCAGAAATCAACTTCTGGGCTCCTGGTATTCATAAGATTGTCTATGCTGGACCACCAGAGGAGAGGCGTCGGTTATTCAAGGAAAGTATTGTTCATCAGAAATTCAATGTTCTGTTGACTACGTATGAGTACCTAATGAACAAGCACGATAGACCCAAGCTGAGCAAAATACATTGGCACTATATAATAATTGATGAAGGCCACCGCATAAAGAATGCTTCTTGCAAGTTGAATGCAGACTTGAAACACTATCAGAGCTCTCACAGACTGCTGTTAACTGGAACACCGTTGCAGAACAATCTTGAAGAACTATGGGCATTACTCAACTTCTTGTTACCCAACATTTTCAATTCATCGGAGGACTTTTCTCAATGGTTTAACAAGCCATTTGAGAGTAATGGAGATAACTCACCTGATGAAGCTTTGCTGTCTGAAGAGGAGAATCTTTTGATCATAAATCGTCTGCACCAAGTTTTGAGGCCATTTGTACTTCGGAGGCTGAAACACAAGGTTGAGAATGAGCTGCCTGAAAAGATTGAGAGGCTAATAAGATGTGAGGCTTCTGCATATCAAAAACTACTGATGAAGAGGGTGGAAGAGAATCTGGGTTCTATTGGCCCTTCAAAGGCTCGGTCAGTGCACAACTCTGTCATGGAGCTACGTAATATTTGCAATCATCCTTATCTCAGCCAGCTTCATGTGGAAGAGGTGGATAGCTTTATACCAAAGCATTATTTGCCGCCGATTATTAGACTCTGTGGGAAGCTTGAGATGTTGGACAGATTGCTGCCTAAATTAAAAGCAACAGATCATCGGGTCCTTTTCTTTTCAACAATGACTAGGCTTCTGGATGTTATGGAGGAGTACCTAACCTCTAAACAGTATCGGTACCTCCGGTTGGATGGCCATACAGCAGGAAGTGATCGTGGTGCCCTAATTGAACACTTTAACCAACCCGATTCTCCATATTTTATTTTCTTACTCAGTATTCGAGCCGGTGGTGTTGGAGTGAATCTTCAAGCTGCTGACACGGTGATCTTATTTGACACTGACTGGAATCCACAGGTTGATCTGCAAGCCCAGGCAAGGGCTCATAGACTTGGTCAGAAGAGGGATGTTCTAGTTCTTCGGTTTGAAACAGTTCAAACTGTTGAAGAACAAGTTAGAGCTTCAGCTGAGCACAAACTTGGCGTTGCTAATCAGAGTATTACTGCGGGTTTTTTTGACAATAATACAAGTGCTGAAGATCGAAGAGAATACTTGGAATCTCTCCTCCGTGAGTGCAAGAAAGAGGAAGCTGCACCTGTTTTGGATGATGATGCTCTAAATGATCTCTTAGCCCGCAGTGAGACAGAGTTAGATGTCTTTGAAGCTGTTGACAAAAAACGAAAGGAAGATGAGCTGGCTACATGGAAAAAATTGGTGGTTGGGCAAGCACCTGATGGTTCTGATCTTACTTGCCCCCCTCCTTCTCGTCTAGTTACTGATGAAGACCTGAAACAGTTCTATGAAGTGATGAAGCTATCAGATGTTCCCAAGGGTGGGGTAGAATCTAACGAAGTAAAGCGAAAGAGTGGATATCTTGGGGGCCTTGATACTCAACAATATGGCAGGGGAAAACGTGCAAGAGAGGTACGTTCATATGAAGAGCAATGGACAGAGGAGGAGTTTGAGAAGATGTGTCAGGTTGAATCTCCAAATTCGTCAAAAGTAAAAGAAATGGCAGGGATGAGTTACCCAACAAATGCCTTCAGTTCTGTTGTTTCTACTTCTAACACAGAACCTACAGCTGTGCCACCAATGGCCCCAATATTGCCATCCGCGGAGAGTTTGCCAGTGCAGCAAATAAAAGAGATAACTCCACCAGCCAAACGTGGCCGTGGAAGGCCAAAAAGAATAACTTCGGATAAGCCGCCTTCTGCAGTGGTCCCTTCAGTGACTTCTGCATCTGTTGAAGTAGACAAGCAGTTACAGAAAGGAATTGAGCCTGGACATTTAACATCTTCAACTCCTGGTTCTATTGCTCATTCGGCTGAAGTTATAGGTATTAGTGGACCTATGCAGCAGTCCGGTACAGTAGTTGGTCCTGATGCACAGCCTGCCTTTCCTATACCTACTATTCCACCTACTACTGAGTCAGTTGCTGCTGCTTCTGTTTCTGTACCTTTACAAGCAAGAGGTCAAGGGCGGAAAACTCCTGGTGGTGAAGGGACTAGGCGTAGAGGGAAGAGGCAAGCCGTGATTTCACCGCCCATCCCTGGTGCTTGTGTTGGTCCTGATTTGAAGGTGAGTGACCAATTTCAAAATCAAGTGAGTCCATCTTCTGGTCAAGCTATCTCCCAGGGTGGAACTACTGCCAGCGTTGCTGCATTACACCAACCAACTACTATTTCAGGTTCTGCTTCTTTAAACAGTGGAAAGGATCATCTGGGTGCTGAAATTCCTTTGAATTCTCAGTTAACCCCTCATCTGCCCTCTGTTACCCCCTTGGTTGAAACTGGCCCCACTTATCCCTCTGTACAGATTGAGCAAACTAAGGGGCAAAATCGGAAGTCACAAGCTGGAGCAGGAGCTCCCAGGCGCAGGGGAAGGAAACAAGCGACAATATCACCTCCAGTTTCTCATGTTCCAGGTCACCAAGACTTGCATCAAACTTCTGGTCTACAGATTTCATCAAGCAGCAAATCAGGTGGCAATACCACTGAACTAAAAAGCTTGCAAGCGAACAATGTTCAAGAATCAATGTGTATTATCCAGGATCAATCGTCACCGAGCCTAGGTGATCAGGATTCAAAACCAATGGAAAAATCAGATGATTTAGCTAAGCAGACGGTGATCTTGTCTTCAAGTCAATATAATACAATGAAATCCCCAGGGTCAGACTTGGAGAAGGTAAAGAATCCTGATGTTCGTGATTCTTCTGTGGAGAAGGTTGAATCTTCTGAAATGAGCTCATCCAAGATTGAAGGTTGCGATAATTCAGGGAATGCAAATTTTCCAGTCCCAACACTACCTGTTACTGAGGTGACAGAGGACCAACTGCTCAGGTGGCAAAACACATCAAGCTTTTGA 6000 0.437 MASSQNVELEAAKFLHKLIQDSTDEPAKLATKLYVILQHMKSSGKENSMPYQVISRAMETVINQHGLDIEALKSSRLPLTGGAQIGSSSQAVGFTKDSRLGLAENEMSKLDTLASGRPPVAPTGGTPDYYQGSVAQRSSQSFDQGSPSSLDSRSANSQSQDRRDTANWDKQANQKDGKKAAPKRKRGDTSSPVELRVDSPCQLDPCSTGGNARKAKLTKAEPSDGLPVKAGELTNFNMVPSSSQMENFPTLSGSMRTMLRANQEGAYAKVHRGMMVPTSASPMAEPVFSSSMQYGGALDRDGGSLSTLADGHKIAQMGRQSSGSEMTMLRQGVPSWDTGKSAPTSSAMPFKEQQLKQLRAQCLVFLAFRNGLPPKKLHLEIALGTTFSREGNTSGVMTQFGGLSNVRETDKTPSGSSSAGKILEPDSLLKGTESPRMMEDKGNPHSDTQILAEERKHLATKRGEVERRIQERVAAQASSATSSQQQDSSSTRGAGVVKNHLDEVDNGNVQVGRSNQPCGIGPNSWTGFAAHKEVSKGTPQISAIQHELAIERRDNVPSQFQNVNVSMMKDGNVITKHISLDGFKTVPVDDASKHGVCSATEQEGNERFASADLPCSPKCTMSERWIMDQQKKRLLDEQNWVQKQQKTRQRMATCFLKLKENVNSSEDISAKTKTVIELKKLQLLDIQRRLRSGFLNDFFKPITTEMEHLKSLKKHRHGRRVKQLEKFEQKMREERQKRIRERQKEFFGEIEVHKEKLDDVFKIKRERWKVFNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQAAKAAAGHFGQDVDEGGSRSFLENSETTFENEDESDQAKHYMESNEKYYMMAHSIKESIAEQPSCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPGIHKIVYAGPPEERRRLFKESIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEENLGSIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVDSFIPKHYLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTSKQYRYLRLDGHTAGSDRGALIEHFNQPDSPYFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRLGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSETELDVFEAVDKKRKEDELATWKKLVVGQAPDGSDLTCPPPSRLVTDEDLKQFYEVMKLSDVPKGGVESNEVKRKSGYLGGLDTQQYGRGKRAREVRSYEEQWTEEEFEKMCQVESPNSSKVKEMAGMSYPTNAFSSVVSTSNTEPTAVPPMAPILPSAESLPVQQIKEITPPAKRGRGRPKRITSDKPPSAVVPSVTSASVEVDKQLQKGIEPGHLTSSTPGSIAHSAEVIGISGPMQQSGTVVGPDAQPAFPIPTIPPTTESVAAASVSVPLQARGQGRKTPGGEGTRRRGKRQAVISPPIPGACVGPDLKVSDQFQNQVSPSSGQAISQGGTTASVAALHQPTTISGSASLNSGKDHLGAEIPLNSQLTPHLPSVTPLVETGPTYPSVQIEQTKGQNRKSQAGAGAPRRRGRKQATISPPVSHVPGHQDLHQTSGLQISSSSKSGGNTTELKSLQANNVQESMCIIQDQSSPSLGDQDSKPMEKSDDLAKQTVILSSSQYNTMKSPGSDLEKVKNPDVRDSSVEKVESSEMSSSKIEGCDNSGNANFPVPTLPVTEVTEDQLLRWQNTSSF* 2000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1817 1877 - -
Dod05g2738 1999 Coils Coil 825 845 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1598 1625 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 472 494 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 390 421 - -
Dod05g2738 1999 Coils Coil 724 744 - -
Dod05g2738 1999 SMART ultradead3 907 1101 IPR014001 -
Dod05g2738 1999 Coils Coil 1387 1407 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 111 229 - -
Dod05g2738 1999 Gene3D - 1152 1374 IPR027417 -
Dod05g2738 1999 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 98 264 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 474 494 - -
Dod05g2738 1999 ProSiteProfiles HSA domain profile. 729 803 IPR014012 -
Dod05g2738 1999 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1234 1380 IPR001650 -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1896 1915 - -
Dod05g2738 1999 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 264 1870 - -
Dod05g2738 1999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 886 1142 IPR027417 -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 390 447 - -
Dod05g2738 1999 Pfam Snf2-ATP coupling, chromatin remodelling complex 1439 1534 IPR029295 GO:0042393
Dod05g2738 1999 Pfam Helicase conserved C-terminal domain 1231 1344 IPR001650 -
Dod05g2738 1999 Pfam SNF2-related domain 915 1205 IPR000330 GO:0005524|GO:0140658
Dod05g2738 1999 SMART helicmild6 1260 1344 IPR001650 -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1695 1737 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1925 1980 - -
Dod05g2738 1999 PANTHER SNF2/RAD54 HELICASE FAMILY 98 264 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1955 1979 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1938 1954 - -
Dod05g2738 1999 SMART SnAC_2 1437 1534 IPR029295 GO:0042393
Dod05g2738 1999 Gene3D - 902 1151 IPR038718 -
Dod05g2738 1999 PANTHER SNF2/RAD54 HELICASE FAMILY 264 1870 - -
Dod05g2738 1999 CDD SF2_C_SNF 1222 1354 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 1855 1877 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 163 192 - -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 433 447 - -
Dod05g2738 1999 CDD DEXHc_SMARCA2_SMARCA4 908 1144 - -
Dod05g2738 1999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1403 IPR027417 -
Dod05g2738 1999 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 923 1090 IPR014001 -
Dod05g2738 1999 MobiDBLite consensus disorder prediction 129 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2738 Dod-Chr5 53482930 53501302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2738 930 1379 RAD5 or RAD16-like Gene Family AT3G16600 24.774 1.58e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod05g2738 SNF2_N 4.9e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2738 - - gmx:100815262 2982.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2738 05 53482930 53501302 Dod05g2738 05 53482930 53501302 ECH