Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2728 ATGGAAGGCTCTGCTAATGAACGCCTTGATTTTGGGAAGATGGGATATGGGTGCAAGCATTACAGAAGGAGATGCAGGATTCGTGCGCCTTGCTGCAATGAGATCTACTCCTGTCGTCATTGCCATAACGAGGCAACGAGCTTATTGAGGAACCCCTTTGATCGGCACGAGCTTGTTCGCCAAGATGTTAAACAAGTTGTTTGTTTAGTTTGTGACACTGAGCAGCCAGTTGCTCAAGTTTGCACTAACTGTGGCGTTAAAATGGGAGAGTACTTCTGTGACATCTGCAAATTCTTCGATGATGATATGGAGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCAAGAGAATTATTTCCATTGCCAGAAGTGTGGGTCTTGCTATTCAGTTGCGCTGCGTGGCAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGCTATGAGTACCTCTTTGACTCATTGAAAGACACCATTGTTTTGAAATGTGGTCACACTATGCACTTTGAATGCTTCCGAGAGATGATAAAGCGTGACAAGTTCTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCCAGGACATGGAAGAGAATTGATGAAGAGATTGAAGCCACTCTCATGCCGGAAGATTATCGATACAGAAAGGTTTGGATACTATGCAATGACTGCAATGACACAACTGAGGTTTACTTCCACGTTCTTGGACAAAAATGCGGCCACTGCCAATCGTATAACACCCGCGCAATTGCTCCTCCAGTTCTTCCTCAATGA 804 0.4465 MEGSANERLDFGKMGYGCKHYRRRCRIRAPCCNEIYSCRHCHNEATSLLRNPFDRHELVRQDVKQVVCLVCDTEQPVAQVCTNCGVKMGEYFCDICKFFDDDMEKQQFHCDDCGICRVGGQENYFHCQKCGSCYSVALRGNHLCVENSMRHHCPICYEYLFDSLKDTIVLKCGHTMHFECFREMIKRDKFCCPICSKSVIDMSRTWKRIDEEIEATLMPEDYRYRKVWILCNDCNDTTEVYFHVLGQKCGHCQSYNTRAIAPPVLPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2728 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Dod05g2728 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Dod05g2728 267 Gene3D - 227 262 - -
Dod05g2728 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Dod05g2728 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Dod05g2728 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Dod05g2728 267 SMART ring_2 153 195 IPR001841 -
Dod05g2728 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Dod05g2728 267 Pfam Ring finger domain 152 195 IPR001841 -
Dod05g2728 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 267 - -
Dod05g2728 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Dod05g2728 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Dod05g2728 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Dod05g2728 267 SUPERFAMILY RING/U-box 152 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2728 Dod-Chr5 53407678 53410308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2728 10 266 C2H2 Transcription Factor Family AT3G18290 40.076 2.25e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2728 K10144 - gmx:100792038 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2728 05 53407678 53410308 Dod05g2728 05 53407678 53410308 ECH
Dod05g2728 05 53407678 53410308 Dod03g0712 03 8874814 8878436 PCT