Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2726 ATGGGTAGGCCCTCCAAGTCTCAGCCTTCTTCCGACGAAGCTCCGTCGAACCCCTCCGATTCCGATTCGGATTCGGATTCCGACGCGGAGGAGAACCACCTCAACGACCAGATCAACGACCAAGACGACGACGAGGAGCTCGAAGCGGTTGCTCGCTCCGCTAGCTCCGGCGACGATGATAATACGCCCGACGAGCCTGCCAGAGATGCCGACGACGATGAGCAGGATGATAGTAATGGTGATCCTGAGATTAGCAAGCGCGAGAAGGCAAGGTTGAAGGAAATGCAAAAGCTGAAGAAGCAGAAAATTCAGGAGATATTGGATGCACAAAATGCAGCCATTGATGCTGATATGAACAATAGAGGAAAGGGAAGATTGAAGTATCTCTTGCAGCAAACTGAGCTGTTTGCTCATTTTGCCAAAGGTGATCAATCTTCTTCTCAGAAGAAGACAAGAGGAAGGGGACGCCATGCATCAAAAGTGACTGAAGAAGAGGAGGATGAAGAGTACCTTAAAGAAGAAGAAGATGGTATGGCAAGCACGCGGCTGATGACTCAACCATCATGTATTCAAGGGAAGATGAGGGACTACCAACTTGCTGGGCTAAACTGGCTCATACGGTTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACATTACAAACTATATCTTTGTTAGGCTATTTACATGAGTTCAGAGGAATAACTGGCCCTCATATGGTTGTTGCCCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTTTGCGTGCAATAAAGTTCCTTGGTAACCCTGATGAAAGGAAGCATATAAGGGAGGAGTTATTGGTTGCTGGGAAGTTTGATGTATGCGTTACAAGTTTTGAAATGGTCATCAAGGAGAAGTCTGCTTTGCGTCGCTTTAGTTGGCGTTACATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAACTCCCTCCTGTCCAAGACAATGAGGCTCTACAGTACAAACTACCGTCTGCTTATAACTGGCACACCACTACAGAACAATCTTCATGAACTCTGGTCTCTTCTCAATTTTCTTCTGCCGGAAATTTTTAGCTCTGCTGAAACTTTCGATGAATGGTTCCAAATTTCTGGTGAAAATGACCAGCAGGAGGTTGTTCAACAACTACACAAGGTCCTTCGTCCATTTCTGCTTCGGAGGTTGAAATCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGGATGTCACAAATGCAGAAACAGTATTACAAGGCATTACTACAGAAAGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGAAAACGTCTCCTAAATATAGCAATGCAACTGCGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCGTATACAACAGGAGACCATCTCGTTACAAATGCTGGTAAAATGGTTTTACTGGATAAGTTGCTTCCTAAACTAAAAGAGCGTGATTCTAGGGTTCTTATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTGATGTTTTGTGGATATCAATATTGTCGCATAGATGGAAATACTGGTGGAGATGATCGTGACGCATCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTTGGCATCAATCTTGCTACTGCTGATGTCGTCATTCTTTATGATAGTGACTGGAATCCACAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGGATTGGTCAGAAGAAAGAAGTTCAAGTGTTCCGATTTTGCACTGAGTATACAATTGAAGAAAAAGTCATTGAAAGGGCATACAAGAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGTCGATTAGCTGAGCAGAAGACTGTAAACAAAGACGAGTTGCTTCAGATGGTTAGATTTGGTGCTGAAATGGTTTTTAGCTCTAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAAGCAACAGCTGAACTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGACGACACTGCTGAGTTGTATGATTTTGATGATGATAAGGATGAGAACAAATTTGATTTCAAAAAGATTGTGAGTGAAAACTGGATTGAGCCACCAAGAAGAGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGCGGTCCTACTAAACCAAAAGAGCCCCGTATTCCCAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACACAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAAGTAAAAGACTCAATAGAAGTTGATGAACCAGATGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAACTGCTAGAGGAGGGGTTTTCATCATGGAGCCGGAAGGATTTTAATACTTTCGTTAGGGCCTGTGAAAAGTATGGCCGGAATGATATTAAAGGTATTGCTTCTGAGATGGAAGGTAAAACAGAGGAGGAAGTTGAACGATATGCAAAAGTCTTCAAAGAAAGATATAAGGAATTAAATGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAGGCTAGAATATCTCGGAAAGATGAGATCATGAAAGCTATTGGCAAGAAATTAGATCGCTACAAGAATCCATGGCTGGAGTTGAAGATACAATATGGGCAGAACAAAGGGAAGTTATACAATGAAGAATGCGACCGATTCATGGTGTGA 2883 0.4246 MGRPSKSQPSSDEAPSNPSDSDSDSDSDAEENHLNDQINDQDDDEELEAVARSASSGDDDNTPDEPARDADDDEQDDSNGDPEISKREKARLKEMQKLKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKTRGRGRHASKVTEEEEDEEYLKEEEDGMASTRLMTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKIVSENWIEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQTHQKNQVKDSIEVDEPDEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNTFVRACEKYGRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMV* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2726 960 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Dod05g2726 960 Pfam SLIDE 902 960 IPR015195 GO:0003677|GO:0005634|GO:0006338
Dod05g2726 960 Gene3D - 195 410 IPR038718 -
Dod05g2726 960 SUPERFAMILY Homeodomain-like 900 960 IPR009057 -
Dod05g2726 960 SMART ultradead3 190 382 IPR014001 -
Dod05g2726 960 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Dod05g2726 960 Gene3D - 415 707 IPR027417 -
Dod05g2726 960 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Dod05g2726 960 Pfam HAND 758 841 IPR015194 GO:0003677|GO:0006338|GO:0031491
Dod05g2726 960 Gene3D iswi atpase 900 932 - -
Dod05g2726 960 CDD SANT 848 892 IPR001005 -
Dod05g2726 960 Gene3D ISWI, HAND domain 746 844 IPR036306 GO:0003677|GO:0006338|GO:0031491
Dod05g2726 960 CDD SF2_C_SNF 495 620 - -
Dod05g2726 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 409 IPR027417 -
Dod05g2726 960 MobiDBLite consensus disorder prediction 1 22 - -
Dod05g2726 960 Coils Coil 85 112 - -
Dod05g2726 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 692 IPR027417 -
Dod05g2726 960 SMART sant 845 894 IPR001005 -
Dod05g2726 960 MobiDBLite consensus disorder prediction 141 178 - -
Dod05g2726 960 Gene3D - 933 960 - -
Dod05g2726 960 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 22 960 - -
Dod05g2726 960 MobiDBLite consensus disorder prediction 64 79 - -
Dod05g2726 960 MobiDBLite consensus disorder prediction 48 63 - -
Dod05g2726 960 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Dod05g2726 960 Gene3D - 845 899 - -
Dod05g2726 960 SUPERFAMILY Homeodomain-like 848 898 IPR009057 -
Dod05g2726 960 SMART helicmild6 525 609 IPR001650 -
Dod05g2726 960 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Dod05g2726 960 ProSiteProfiles SANT domain profile. 844 896 IPR017884 -
Dod05g2726 960 PANTHER SNF2/RAD54 HELICASE FAMILY 22 960 - -
Dod05g2726 960 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 757 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Dod05g2726 960 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2726 Dod-Chr5 53393454 53401720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2726 215 636 RAD5 or RAD16-like Gene Family AT1G02670 27.723 1.55e-43 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod05g2726 SNF2_N 1e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2726 K11654 - gmx:100791510 1730.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2726 05 53393454 53401720 Dod05g2726 05 53393454 53401720 ECH
Dod05g2726 05 53393454 53401720 Dod03g0709 03 8847591 8856306 PCT