Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2718 ATGTCCACCTCCAGAACCTCAGATACACCCTTCAAGGGATATGATCCCAATCAAGCTCAAATGTGCTTGTCTCTTCTCCAACGCAACACATCTCCTTGTGGTGAGAAGAGAGGCAGAAGGAAGCAGTCAGAACCAGGGAGGTTTCTTGGTGTGAGGAGGCGCCCTTGGGGCAGATATGCTGCTGAAATTAGAGACCCTGCAACCAAAGAGAGGCATTGGCTTGGCACCTTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGATAGAGCTGCTTTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTCATTTACACTGACAACATCAATTTCCATGCTCTTCTTACACCTATTGATGTCCAAGCTCTCTTGCCAGCTTCACAGTTCCACCACACTACTAACACTCAGACCAAACAACCATCCAATCAAAATAGCCTTTCCCAGCTTGATACTTCTTCCCATAGCATTGAGAACCCCTCCCCTTTGAACAATGACATGTGTGTTGAAACTCCATATGGGTCAGCTCAGGATGACAACTTCTTCTTTTCCAATAATGATTATAACTCTGGCTATTTGGAATGCATCGTTCCTGATAATTGTTTCAGGCCTGCTGCCAGTAGTACTAACAGTTCAAACTCCAGAAAAAGCAATGTCAGTGCTTCAAGTGATCAAAAGGTTAGCCCCATTTACACAAGCTCCATGGAGAGTAGTCAATCATATCTTGATCACATGACCTCTTTCTCTCAAGAAGCCATAATAATGCCACCAAGGGACTCTAACTTCTCAGACTTTTCTTATCCAAGTGAAGTTAGTCAAGGATTATGGGATAATATTAATCAGCAATCATGGGATTGGAATTCCAGTGAACTTTCAGCTATATTTAACAACAACCCATCAAGGGTAGAAGAAGAAGGGTGCATGGATACATTGTATCCCATCATCACTGACAATCAAAGCTATGGGATAATGAATCAAGCTGCTTCATCAACTAACTGTTCACCATCACTTCCACCCTTTGGGGACGTAGACTTGGGGTACCCACTCTTCTGA 1050 0.4362 MSTSRTSDTPFKGYDPNQAQMCLSLLQRNTSPCGEKRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYTDNINFHALLTPIDVQALLPASQFHHTTNTQTKQPSNQNSLSQLDTSSHSIENPSPLNNDMCVETPYGSAQDDNFFFSNNDYNSGYLECIVPDNCFRPAASSTNSSNSRKSNVSASSDQKVSPIYTSSMESSQSYLDHMTSFSQEAIIMPPRDSNFSDFSYPSEVSQGLWDNINQQSWDWNSSELSAIFNNNPSRVEEEGCMDTLYPIITDNQSYGIMNQAASSTNCSPSLPPFGDVDLGYPLF* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2718 349 MobiDBLite consensus disorder prediction 205 226 - -
Dod05g2718 349 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Dod05g2718 349 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 349 - -
Dod05g2718 349 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Dod05g2718 349 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Dod05g2718 349 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Dod05g2718 349 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Dod05g2718 349 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Dod05g2718 349 MobiDBLite consensus disorder prediction 132 167 - -
Dod05g2718 349 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 349 - -
Dod05g2718 349 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Dod05g2718 349 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2718 Dod-Chr5 53329971 53331022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2718 1 230 AP2-EREBP Transcription Factor Family AT5G18560 44.891 1.01e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod05g2718 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2718 - - gmx:100812047 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2718 05 53329971 53331022 Dod03g0702 03 8741790 8742782 PCT