Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2717 ATGGAGCGGTACGGCCGTGCCGGCGAGGGGTCGCAGTCGGATCCGCGGCGGGAGTGGAACGTCGCCGCCGCCGACACGGGGCTTGAAGAGCCTATGTGGACGCTTGGATTGGGTGGTGGTGAATCGTACCCTCAGCGTCCCGATGAAGCTGATTGTATCTACTATCTCAGAACGGGTTTTTGCGGCTATGGCCCGAGGTGTCGGTTCAACCACCCACGTGACCGTGCCGCGGTTATTGGAGCTGCCAGGACTGGAGGGGAGTATCCAGAGCGAGTGGGCCAGCCTGTGTGCCAGTTTTATATGAGGACGGGATCGTGCAAATTTGGTGCATCTTGCAAGTATCACCATCCGAGGCTGGCAGCAGGCACTGCTGCCCCTGTGTCATTAAATTATTGTGGATATCCATTGCGAGTGGGCGAGAAAGAATGTTCCTATTATATGAAAACTGGACAATGCAAGTTCGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCAGGCGTCCAAGTTCCAGCACCATCGCCAGTTCCCCCAGTTTCACCTCTACCTGTACCAGTACCCTCACCGTTATATCCAACTGTACAGCCTCCTTCTGGTCCTTCATCACAGCAATACGGTGTGCTGGTTGCAAGGCCTCCTATGCTGCCTGGCTCTTTAGTGCAGGGCCCCTATGGGCCTGTGGTAGTATCCCCTGCCATGGTCCCTTTCTCAGGCTGGGGTCCTTATCAGGCTCCTGCATCAAGTCCCGTACTTCCTTCTAGTACTCCATCTAATGTCGGTTCAACGCAGCTTTATGAGATAACTCAGCTGACTTCTCTGCCGACTGCCTACTCTGGATCTTATCAAACTTCTGGTTCCTCAATTGGTCCTTCAGGCAGTACTCAGAAGGAGCATCCATATCCTGAAAGGCCTGACCAACCAGAATGTCAGTATTACATGAAAACAGGGGAGTGCAAATTTGGTCCATCGTGTAGATATCATCATCCACCAGACATGAATGCACCGAAAGCGAATGTGATTCTTAGTCCCGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAGTTTGTAAGTTTGGTCCTGCATGCAGATTTGATCATCCTATGGGATCACTCAGTTATAGTCCATCTGCATCTTCCCTGGCTGATATGCCGGTTGCACCTTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCATCATCTTCATCATCAGAGTTGCGGCCTGAACTTTCCTCAGGATTGAGCAAGGAGTCTGTTTCATCCCGAATGTCTACATCAATGAGCACATCTACTGCATCAGTTGGCTTGACCTTGTCAACTGCAGGACCCATTTCTCAATCAAACACCCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCAGTGCTGCCACAAGTAGCACTGTCTCTCACTCCTCAAGCTAA 1452 0.5186 MERYGRAGEGSQSDPRREWNVAAADTGLEEPMWTLGLGGGESYPQRPDEADCIYYLRTGFCGYGPRCRFNHPRDRAAVIGAARTGGEYPERVGQPVCQFYMRTGSCKFGASCKYHHPRLAAGTAAPVSLNYCGYPLRVGEKECSYYMKTGQCKFGATCKFHHPQPAGVQVPAPSPVPPVSPLPVPVPSPLYPTVQPPSGPSSQQYGVLVARPPMLPGSLVQGPYGPVVVSPAMVPFSGWGPYQAPASSPVLPSSTPSNVGSTQLYEITQLTSLPTAYSGSYQTSGSSIGPSGSTQKEHPYPERPDQPECQYYMKTGECKFGPSCRYHHPPDMNAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGPACRFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELSSGLSKESVSSRMSTSMSTSTASVGLTLSTAGPISQSNTQPSAQSSSSSATTSAATSSTVSHSSS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2717 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Dod05g2717 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Dod05g2717 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Dod05g2717 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Dod05g2717 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Dod05g2717 483 Gene3D - 292 378 - -
Dod05g2717 483 PANTHER PROTEIN PHOSPHATASE RELATED 1 469 - -
Dod05g2717 483 SUPERFAMILY CCCH zinc finger 353 379 IPR036855 GO:0046872
Dod05g2717 483 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Dod05g2717 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Dod05g2717 483 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Dod05g2717 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Dod05g2717 483 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Dod05g2717 483 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Dod05g2717 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Dod05g2717 483 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Dod05g2717 483 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Dod05g2717 483 SUPERFAMILY CCCH zinc finger 137 165 IPR036855 GO:0046872
Dod05g2717 483 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 469 - -
Dod05g2717 483 MobiDBLite consensus disorder prediction 278 304 - -
Dod05g2717 483 MobiDBLite consensus disorder prediction 278 294 - -
Dod05g2717 483 Gene3D - 44 124 - -
Dod05g2717 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Dod05g2717 483 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872
Dod05g2717 483 MobiDBLite consensus disorder prediction 405 483 - -
Dod05g2717 483 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Dod05g2717 483 Gene3D - 125 172 - -
Dod05g2717 483 SUPERFAMILY CCCH zinc finger 306 331 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2717 Dod-Chr5 53322699 53328242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2717 1 451 C2H2 Transcription Factor Family AT5G18550 57.019 3.47e-158 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g2717 zf-CCCH 5.1e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2717 05 53322699 53328242 Dod05g2717 05 53322699 53328242 ECH
Dod05g2717 05 53322699 53328242 Dod03g0701 03 8726342 8734874 PCT