Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2716 ATGGCACCTTCTAAAAAATCTAAAAGTGTCAATAAGAAGTATCTTGATTATCGTGAAGCTGCTCCTAGTAAAGATAAATATGCAGAGAATGCTAGCAAGAATAAGCTGAAGGCAAGTCCTGGCATTCAGAAGAAGAGAAAATTGGCTGACATGTTAGGGCAACAATGGAGTAAGGAGGAGCTTGAGCATTTCTATGAAGCTTACCGCAGATATGGGAAAGACTGGAAAAAGGTTGCTCTTGCAGTACGCAATCGATCTATGGAAATGGTAGAAGCTCTGTACACTATGAACAGAGCATACTTATCTCTTCCAGAAGGCACCGCTTCTGTCGTTGGACTGATAGCAATGATGACAGACCATTATAGTGTTATGGGAGGAAGTGACAGTGAAAAAGAAAGCAATGAAGAAGCAGAAGGATCTAAAAAGTCTAAAAAACTTTTGCGGGGAAACCAAATGGATGACAACAAAGCCTTAGATGGGCACTTTTCAGATCATTCTCAGTCACAATCTGTTGCATCAGGTGATGGTTGCCTGTCACTGTTGAAGAAGAGAAATTCTGGGCTTAGACCTCATGCTGTTCGAAAGCGAACTCCACGAGTCCCTATTTCACATTCTATTGGAAAAGATAGTGCAGAGAAGTTATTTTCATTTGCTAGGCAGGGCTATAAACAAATGGTTGATACTAATGATGTTGCTCACAAGGTTGCATTAGCATTGACAGAGGCGTCACAAAGAGGTGGCTCTTCAAAAGTTTCTGGATCACCAAACAAGAGAACTACAACATCACCTAGTCAGAAAAGTGGGAAGAAGCATGGTAAATCAGAAATAGCTGGATCCAAGTTCTGCAATACTGAAATGGATGATAGTAGTTCTGAATTGAGTTTAGGAAGCACAGAAGGCGACAATGGAGATTATTCTAGGAAAACAAGTTATTGGACCAATAGAGAAAATATTGGAAGAGGAAAGAATCAGGAAAAGAGAATAAAACACTATGGGAAGACTTTAGAACCTGAGGAAAAATTAAACAAGCATTTGGATGACATAAAGGAGGCTTCTAGTGGGACAGATGATGGTAAAAATCTGAGTTTTATCAAATCCTGTTTTAGCACTGATTTTGCAGATGCAAAAAATACAAGGCCCTCTTACAAGGGATCCAAGAAGAAAAGTAAAAAACTTCTGGTTGAGAAAGATGAAGCTTCTGCTATTGATGCTCTGAAAACTTTGGCTGATCTGTCTTTGATGATGCCAGTAACAAACCCTGACACTGTGTCACTTGCACAGGCCAGGGAAGGAAACCATAATGTTGATCAGGCTAAAATGAAAACACAGAAAGTATCCAAGATTGAAAGTGCTGCTTCAAGTAAATTAGGCAAGGTTTCTTCTGATGGTGGGGCTGCTGTTCCTGAAGTGGAGGGTGTGTACCAGCTTAATGCAGGAATCAGGAAAAGGAAACGAAAAACTTTCACCTCGAAAAATGAGGAAACACATACTGATTCTCATTTAAGCCGTTCCCAGAAAGTCAAGGGTAATGATGAGGTGAAGAAGTCCATGGTTAAAGGTAAACGGTCATCTGTTGGTACAACACATCCAAAACATCTAAAAGTGGTGAAATCCCCAGGAAAGATGTCTTCAAGTGCTAATGACAAAGGGGAAGGGGATGATTCATCTGTATCTCTCATAAAGGTTTCATCTTCTAACCAAGTCAGTCAAGTTAACAAAGGAAGGTCCAGACGAAAGGTGGAAAAACCAAAACCAATGGTGCAAGGAGATCCAATGGTGTCTGGAAATATATCTAGTAGTCAGCATAATAAATCCATTGCTCCAGTCCAGGACAGTTCTTCTAGTCCCAAGGGAAAGCTCGCTCATTGCCTGTCTTCACATCAAACACGGCGGTGGTGCACTTTTGAGTGGTTTTATAGTGCTATTGATTACCCATGGTTTTCAAAGAGAGAGTTCATGGAGTACTTGGACCATGTTGGATTGGGTCATGTTCCCAGACTGACTCGTATCGAGTGGGGAGTCATTAGAAGTTCTCTTGGCAAACCACGAAGATTTTCAGAGCAATTTTTGATAGAAGAAAAGCATAAACTTAATCAATACCGAGAATCTGTTAGATCACATTATGCTGAAGTTTTTGCTGGTACCAAGGAAGGCCTTCCCACTGATTTGGCCCGGCCTTTAATTGTTGGGCAGCGGGTAATTGCTATTCATCCGAAGACAAGAGAGATTCATAATGGAAGTATACTAACTGTTGACCATTGTTGGTGTCGGGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTTATGGATATTGATTGCATGCCTATGTATCCATTTGAAAATATGCCTACATCTCTGATAAGACACAATGTCACAACTGCTAGAACAAATGAGAATCTTAACGAGCTCAAGCTTAATGGAACACTGAAACAAGAAACAGTTGCAGATCACACAATTTTGTTTCCTAGTGAGAACTTGGATACCACCAAAGGTCTTTATATATCACCCACTATACATGGAAGCAGTACTTTATCAAAACAGGGGGTTTCTTCAAGCTCCAAATCACGAGTCAAAGTTGAGTGCAGTCAGATTTGTAATGCCCCACTAGCATCAAGTTCCCATCCTTCCCCTCTTGAACATGTCCGCTCAAAAGAAGCTGACATATTGGCCATCTCAGAGTTGACTCATGCTCTTGACAAAAAGGAACTTGTGTTGTCTGAATTAAAGCACATGAACGATGGGATATTGGAAAGCCAGAAATATGGAGACAACTCGGTGAAAGATTCAGAGCCTTTAAAGAGGAATTATGCTTCAGTACTAAAGCATTTAACTGAAGCGAACGAGCAGGTTTCTTCCGCCTTGCTTTGCCTGAGGCAACGCAACACATATCAAGGGAGCACCTCAGCCTTTTCATTAAAGGCCATGGCTAATTACGATGATCCTGGTGGTCAGGCTAGTTCTTCCAATTGTTCAGCATGTCACAATCAAGAATCAATATCTCATAGTCACATAACTGAAATTGTTGAAAGTTCCAGAAGAAAAGCCCGAACAATGGTTGTTCAAGCTACACAGGCAATGTCAATTTTTAGAAAGACAGAAAGTAAGGTTGAAAGAATTGAAGACGCAATAAATTTTATCAATAATCGGCTTTCAGTGGATGATCCTGCTGCAGCCACAAATTCACTGCCTGCAGATTCTATACATGTAACTCTGGCTTCTCAGGATCAATTGACTGGCAGCACATTAGGTCCCTTGGCAAGTTGTCATGTACAAGATGCTGAACTTAACAGTTCATCTGACCAAAATGAAATCAACATTCCTTCGGAACTTATATCTCACTGTCTAGCTACACTGCTCATGATCCAGATGTACATAATTTCAAAGCAGTATCGTGTGGCATTTCGTATTCTGTACCTACCAGCAATGTCTATGGGATGA 3444 0.4074 MAPSKKSKSVNKKYLDYREAAPSKDKYAENASKNKLKASPGIQKKRKLADMLGQQWSKEELEHFYEAYRRYGKDWKKVALAVRNRSMEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSVMGGSDSEKESNEEAEGSKKSKKLLRGNQMDDNKALDGHFSDHSQSQSVASGDGCLSLLKKRNSGLRPHAVRKRTPRVPISHSIGKDSAEKLFSFARQGYKQMVDTNDVAHKVALALTEASQRGGSSKVSGSPNKRTTTSPSQKSGKKHGKSEIAGSKFCNTEMDDSSSELSLGSTEGDNGDYSRKTSYWTNRENIGRGKNQEKRIKHYGKTLEPEEKLNKHLDDIKEASSGTDDGKNLSFIKSCFSTDFADAKNTRPSYKGSKKKSKKLLVEKDEASAIDALKTLADLSLMMPVTNPDTVSLAQAREGNHNVDQAKMKTQKVSKIESAASSKLGKVSSDGGAAVPEVEGVYQLNAGIRKRKRKTFTSKNEETHTDSHLSRSQKVKGNDEVKKSMVKGKRSSVGTTHPKHLKVVKSPGKMSSSANDKGEGDDSSVSLIKVSSSNQVSQVNKGRSRRKVEKPKPMVQGDPMVSGNISSSQHNKSIAPVQDSSSSPKGKLAHCLSSHQTRRWCTFEWFYSAIDYPWFSKREFMEYLDHVGLGHVPRLTRIEWGVIRSSLGKPRRFSEQFLIEEKHKLNQYRESVRSHYAEVFAGTKEGLPTDLARPLIVGQRVIAIHPKTREIHNGSILTVDHCWCRVQFDQPELGVEFVMDIDCMPMYPFENMPTSLIRHNVTTARTNENLNELKLNGTLKQETVADHTILFPSENLDTTKGLYISPTIHGSSTLSKQGVSSSSKSRVKVECSQICNAPLASSSHPSPLEHVRSKEADILAISELTHALDKKELVLSELKHMNDGILESQKYGDNSVKDSEPLKRNYASVLKHLTEANEQVSSALLCLRQRNTYQGSTSAFSLKAMANYDDPGGQASSSNCSACHNQESISHSHITEIVESSRRKARTMVVQATQAMSIFRKTESKVERIEDAINFINNRLSVDDPAAATNSLPADSIHVTLASQDQLTGSTLGPLASCHVQDAELNSSSDQNEINIPSELISHCLATLLMIQMYIISKQYRVAFRILYLPAMSMG* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2716 1147 MobiDBLite consensus disorder prediction 125 161 - -
Dod05g2716 1147 Gene3D - 2 108 - -
Dod05g2716 1147 SMART DIRP_2 638 739 IPR033471 -
Dod05g2716 1147 Coils Coil 1031 1051 - -
Dod05g2716 1147 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1132 IPR028306 -
Dod05g2716 1147 PANTHER LIN-9 1 1132 IPR010561 GO:0006351|GO:0017053
Dod05g2716 1147 MobiDBLite consensus disorder prediction 487 519 - -
Dod05g2716 1147 MobiDBLite consensus disorder prediction 592 620 - -
Dod05g2716 1147 CDD SANT 56 90 IPR001005 -
Dod05g2716 1147 MobiDBLite consensus disorder prediction 540 573 - -
Dod05g2716 1147 MobiDBLite consensus disorder prediction 242 267 - -
Dod05g2716 1147 MobiDBLite consensus disorder prediction 485 620 - -
Dod05g2716 1147 MobiDBLite consensus disorder prediction 283 309 - -
Dod05g2716 1147 Pfam DIRP 637 738 IPR033471 -
Dod05g2716 1147 MobiDBLite consensus disorder prediction 242 309 - -
Dod05g2716 1147 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Dod05g2716 1147 SMART sant 52 100 IPR001005 -
Dod05g2716 1147 Pfam Myb-like DNA-binding domain 54 90 IPR001005 -
Dod05g2716 1147 MobiDBLite consensus disorder prediction 125 173 - -
Dod05g2716 1147 ProSiteProfiles SANT domain profile. 56 88 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2716 Dod-Chr5 53297557 53311264 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod05g2716 DIRP 4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2716 - - adu:107464346 1729.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2716 05 53297557 53311264 Dod05g2716 05 53297557 53311264 ECH