Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2715 ATGGATTCTGCGAGGGATGCGGGTAGTGTTGCAGGGACAGTACTAATTCCCATGCGTTTTGTGTGGCCATATGGTGGAAGAAGTGTGTATCTCAGTGGTTCTTTCACACGGTGGTCTGAGCCTCTACAAATGTCGCCTGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTCACAGCTTAGCCCCTGGTTATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGACGAGCATCAACCTTATATATCTGGGGAATTCGGGATAGTTAACACTGTTTTATTGGCTACTGATCCTAATTTTGTACCTACTTTAAATCCAGATATGGCTTCTGGATCTAACATGGATGTGGATAATGAGGCTTTCAGGCGTGTGGTCCGGTTGACAGATGGTACATTGAGCGAGGTGTTGCCAAGAATATCAGATGTTGATGTACAAACCTCTTGTCAGCGTATTTCTGCATTCTTGTCTATGCGCACAGCTTATGAATTACTTCCAGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATCTGCCAGTGAAACAGGCATTTCACATTCTGCATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGACTTTTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGATTGGGAGTCATGGGTCCAATCTGACAGAGGAGGAGCTTGAAACGCATACCATATCTGCTTGGAAAGAAGGAAAATCTTATCTAAATAGACAAAACAATGGACATGGAACCACATTTTCAAGACGTTTTGTCCATGCGGGGCCATTTGACAATTTGAAAGATATTTCTGTGAAGATCCTGCAAAATGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCATTTCCACAGCTACTACATGTTGCGTCGCTTTCTGGAATACTTAAATGCATTTGCAGGTATTTTAGGCATTGCTCTAGTTCATTGCCTATACTTCAACTTCCAATTTGCACAATTCCTGTGGGTACGTGGATGCCTAAAATTGGGGAGTCTAATCGACGGCCTCTAGCAATGTTGAAACCAAGTGCTTCTCTTACTTCAGCCTTAAACCTATTAGTTCAAGCTGAAGTAAGTTCAATACCAATAGTTGATGATAATGACTCATTACTGGATATATACTGCCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATTAACCTTGATGAAATGACTGTACATCAGGCATTGCAGTTGGGCCAGGACTCTTATAATCCTTACGAAATGAGAAGTCAGAGATGTCAGATGTGTCTACGATCTGATTCTCTGCATAAAGTGATGGATCGCTTGGCAAATCCAGGTGTCCGGCGGCTAATTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCGTTATTTCATTAAGTGACATATTCAAGTTCTTCCTCGGTTAG 1458 0.4232 MDSARDAGSVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSEPLQMSPVEGCPTVFQVIHSLAPGYHQYKFFVDGEWRHDEHQPYISGEFGIVNTVLLATDPNFVPTLNPDMASGSNMDVDNEAFRRVVRLTDGTLSEVLPRISDVDVQTSCQRISAFLSMRTAYELLPESGKVVALDVDLPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSALDFILILREIGSHGSNLTEEELETHTISAWKEGKSYLNRQNNGHGTTFSRRFVHAGPFDNLKDISVKILQNEVSTVPIIHSSSEDGSFPQLLHVASLSGILKCICRYFRHCSSSLPILQLPICTIPVGTWMPKIGESNRRPLAMLKPSASLTSALNLLVQAEVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDSYNPYEMRSQRCQMCLRSDSLHKVMDRLANPGVRRLIIVEAGSKRVEGVISLSDIFKFFLG* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2715 485 Gene3D - 142 325 IPR046342 -
Dod05g2715 485 Pfam CBS domain 351 397 IPR000644 -
Dod05g2715 485 Pfam CBS domain 438 484 IPR000644 -
Dod05g2715 485 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Dod05g2715 485 SUPERFAMILY CBS-domain pair 151 322 IPR046342 -
Dod05g2715 485 ProSiteProfiles CBS domain profile. 349 406 IPR000644 -
Dod05g2715 485 ProSiteProfiles CBS domain profile. 431 485 IPR000644 -
Dod05g2715 485 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 8 485 - -
Dod05g2715 485 SUPERFAMILY CBS-domain pair 333 484 IPR046342 -
Dod05g2715 485 SMART cbs_1 435 484 IPR000644 -
Dod05g2715 485 SMART cbs_1 353 401 IPR000644 -
Dod05g2715 485 SMART cbs_1 171 220 IPR000644 -
Dod05g2715 485 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 485 - -
Dod05g2715 485 Gene3D - 333 485 IPR046342 -
Dod05g2715 485 SUPERFAMILY E set domains 16 97 IPR014756 -
Dod05g2715 485 Gene3D Immunoglobulins 11 96 IPR013783 -
Dod05g2715 485 CDD E_set_AMPKbeta_like_N 17 95 - -
Dod05g2715 485 Pfam Glycogen recognition site of AMP-activated protein kinase 16 99 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2715 Dod-Chr5 53289036 53295726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2715 6 106 Protein tyrosine phosphatase (PTP) family AT3G01510 32.692 2.71e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2715 - - gmx:100785692 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2715 05 53289036 53295726 Dod05g2715 05 53289036 53295726 ECH
Dod05g2715 05 53289036 53295726 Dod03g1348 03 17182036 17192314 PCT