Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2709 ATGGATAACGTTGAGGGCAGTTCCTCTAATGACGGTGGTGGCGTCAAGGAACAAGACCGGTTGTTGCCAATAGCCAACGTTGGACGAATCATGAAGCAGATTCTGCCCCAGAACGCAAAAATCTCAAAGGAGGCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTCATAAGCTTTGTGACAAGCGAGGCATCGGAGAAGTGCAGGAAGGAGAGGAGGAAGACCGTGAATGGGGATGACATCTGCTGGGCCTTGGGAACGCTTGGTTTTGATGACTATGCAGATCCAATGAGAAGGTATTTGCATAGATATAGAGAACTTGAGGTAGATAGAGGTAATAATAATAATCAAGAAAGAGGGAATAGCCCTGATGATGAAGAGAACAAGGATCATCATCATGATGAACCATTTAAGTTGCCCCCTAGAGGAATGACTTACTAG 441 0.4512 MDNVEGSSSNDGGGVKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYADPMRRYLHRYRELEVDRGNNNNQERGNSPDDEENKDHHHDEPFKLPPRGMTY* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2709 146 MobiDBLite consensus disorder prediction 105 146 - -
Dod05g2709 146 Gene3D Histone, subunit A 10 139 IPR009072 GO:0046982
Dod05g2709 146 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 7 132 - -
Dod05g2709 146 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Dod05g2709 146 SUPERFAMILY Histone-fold 18 132 IPR009072 GO:0046982
Dod05g2709 146 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod05g2709 146 MobiDBLite consensus disorder prediction 120 139 - -
Dod05g2709 146 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Dod05g2709 146 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Dod05g2709 146 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Dod05g2709 146 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2709 Dod-Chr5 53225372 53225812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2709 4 115 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.321 1.02e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod05g2709 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2709 K08065 - gmx:100794513 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2709 05 53225372 53225812 Dod03g1344 03 17100068 17100805 PCT