Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2708 ATGTCTCTGTGTAACTATCACCCTCTAAAAAGAGTTTTTCTCTACCTCAACAGGAACAGTACCGCTATCTCTGTGTGTGACCCATTAGCATCAACATCCCCAGAATGTTACGATCTTCTGCATCACAAACACCATCCATCACCCATCATCTCTGTCCACTTCTTCTCCACCACTTCTTCCACCACCACGTCGCATCGACAATCTTTCACGGTGTCCTACCTCAGAAGCAAGTGCGGCTTCTCGCAAGAAGCTGCTCTCAAAGCATACAAGCGGGTTCATTTCGACACTCCCGATAAGCCCGATTCAGCTCTCTCCTTCTTCAGAAACCAAGGTTTCTCAAACTCCCAGATCAACAGCATCATCAGCAGGAGACCGGATCTGCTTACATGCGACCTCAACAAAAGGGTGTTGCCAAAGTTTCAATTTTTAGCCTCCAAAGGTGCTTCCCGCTCCGACATTCTCCTCATGGTGACTAGGAGCCCGGGGTTCCTGCGTGCCAGCCTTGAGAACCACATAGTCCCCCTGTATGAATTGGTAAGGAGGTTCTGTCCCTCTGATGAGAAAACCATTACTTATACTGTTGCATGCCCCCCTTTCCTTAGTGATGGTCGAGTCCATCAAAATGTGAATTTGCTCCTTCGTCATGGATTGACTGACTCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTATACTGTGCTCTGCTGAATTGGGTAAAACCGTGGAGGAACTTAAGCAATTGGGATTTCATCCTTCCAAGTTTGATTTCAGTGTTGCAATGCTGGCCAAAAGGGCTGTTACCAAATCAAAGTGGGATGCCAAAGTTGAAGCCTTCAAGAAATGGGGTTGGTCTGAACAAGAGATTTTGGATGCTTTTAGGAGGCATCCGCAGTGTATGCTTCGATCTAAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCGGTAAGCTTGGGTGGGACCGTTCAGTGCTCCGCAAGAGACCGGCAATTTTTGGATTTAGTTTGGAGAAAAGGCTTATTCCAAGGGCTTCAGTTATCCAGTATCTTCTCTCCAAAGGTTTGATGAAGGAGAATGCTAACTTAGCTACACCATTTTGTTTGTCTGATAAGGTGTTCCTGCAAAGATTTGTGACATGTTTCGAGGAGAATGATACATCTCAGCTAGTAAAGCTATGTCAGGGAGGATGTTAG 1194 0.4598 MSLCNYHPLKRVFLYLNRNSTAISVCDPLASTSPECYDLLHHKHHPSPIISVHFFSTTSSTTTSHRQSFTVSYLRSKCGFSQEAALKAYKRVHFDTPDKPDSALSFFRNQGFSNSQINSIISRRPDLLTCDLNKRVLPKFQFLASKGASRSDILLMVTRSPGFLRASLENHIVPLYELVRRFCPSDEKTITYTVACPPFLSDGRVHQNVNLLLRHGLTDSNIHHLLRTRPSILCSAELGKTVEELKQLGFHPSKFDFSVAMLAKRAVTKSKWDAKVEAFKKWGWSEQEILDAFRRHPQCMLRSKDKLNAVMSFWIGKLGWDRSVLRKRPAIFGFSLEKRLIPRASVIQYLLSKGLMKENANLATPFCLSDKVFLQRFVTCFEENDTSQLVKLCQGGC* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2708 397 Gene3D Transcription termination factor 3, mitochondrial 185 384 IPR038538 -
Dod05g2708 397 PANTHER CGI-12 PROTEIN-RELATED 58 395 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 SMART mt_12 118 149 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 SMART mt_12 322 356 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 SMART mt_12 223 251 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 SMART mt_12 154 185 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 Pfam mTERF 202 373 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 Pfam mTERF 104 251 IPR003690 GO:0003690|GO:0006355
Dod05g2708 397 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 58 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2708 Dod-Chr5 53214750 53215943 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dod05g2708 mTERF 5.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2708 K15032 - gmx:102666622 346.28