Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2707 ATGTTTCACATTAAGCATCACCTTCTAACTCTGAGAAGAGCTCTTCTCTACATCAACATCAAGGGCAACAAGAGTAACAGCATCACTATCTCTGACCCAATAGCATCACCAGCCCCAAAATGTTACCTTTTTCTGCCACACAAACCCTACCCATCATCACTCATCCCTATCAGCTTCTTCTCTACCTCTTCTTCCACCATCTCCGATCAACAATCTTTCACGCTGTCGTACCTCACAGACAAGTGCGGATTCTCGCGAGAAGCTGCCCTCACAGCACTCAGGCAAGTCCGTTTCGACACTCCCGACAAGCCCGATTCAGTTTTCGCCTTCTTCAGATGCCACGGTTTCTCAGACTCCCAGATCAACAGCATCATCAGGAGGGTGCCGATTCTGCTTACATGCGACCCCAACAAAAGGGTGTTGCCAAAGTTTCAGTTTTTAGCCTCCAAAGGTGTTTCTCACTCTGACATCATCCTCATGGTGACTAGGAGCCCGCGCATCCTGCGTCCTAGCCTTAAGAACCACATAGTCCCTGTGTTTGAATTCCTAAGGAGGTTCTTCCCCTCCGATGAGAAAGCCATTGCTTCTATAATTTCATTCCCACCTTCCATTGCTGATGTTCGTTTGCAACAAAATGTGAATTTGCTGCTCCATCAAGGGTTGTCTGACTCCGGCATTTACCATTTGCTTAAAACTAGGCCTTCACTGCTCTGCTCTACTCACTTGAGTAAAGCCGTGGAGGAAGTGAATCAATTGGGATTTGATCCTTCCAAGCTTTATTTCAGTATTGCATTGCTGGCCAAAGCGGTTGTGACCAAATCCCAGTGGGATGCCAAAGTTGAAGCCTTAAAGAAATGGGCTTGGTCTGAACAAGAAATTATCGATGCGTTTCGGAGGCATCCGCAGTTTATGCTTCGTTCTGTGGACAAACTCAATGCAGTGATGAGCTTTTGGGTTTGTAAGCTTGGCTGGGATAGATCAGTGCTCTGCTTGCGACCAACAATTTTTGGGTATAGTTTGGAGAGAAGGCTTATTCCAAGGGCTTCGGTTATTCAGTATCTTCTCTCCAAAGGTTTGATGAAGAAGAATGCTAGCTTAGCTACACCATTTGGTTTGACTGATAAGTTGTTCCTGCAAAGATATGTGACATATTTTGAGGAGAAGGAAACCTCTCAGCTACTAAAGCTATACCAGGGAGGATGTAGCATATGA 1212 0.4571 MFHIKHHLLTLRRALLYINIKGNKSNSITISDPIASPAPKCYLFLPHKPYPSSLIPISFFSTSSSTISDQQSFTLSYLTDKCGFSREAALTALRQVRFDTPDKPDSVFAFFRCHGFSDSQINSIIRRVPILLTCDPNKRVLPKFQFLASKGVSHSDIILMVTRSPRILRPSLKNHIVPVFEFLRRFFPSDEKAIASIISFPPSIADVRLQQNVNLLLHQGLSDSGIYHLLKTRPSLLCSTHLSKAVEEVNQLGFDPSKLYFSIALLAKAVVTKSQWDAKVEALKKWAWSEQEIIDAFRRHPQFMLRSVDKLNAVMSFWVCKLGWDRSVLCLRPTIFGYSLERRLIPRASVIQYLLSKGLMKKNASLATPFGLTDKLFLQRYVTYFEEKETSQLLKLYQGGCSI* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2707 403 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Dod05g2707 403 SMART mt_12 326 360 IPR003690 GO:0003690|GO:0006355
Dod05g2707 403 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Dod05g2707 403 SMART mt_12 158 188 IPR003690 GO:0003690|GO:0006355
Dod05g2707 403 Gene3D Transcription termination factor 3, mitochondrial 189 389 IPR038538 -
Dod05g2707 403 Pfam mTERF 207 377 IPR003690 GO:0003690|GO:0006355
Dod05g2707 403 Pfam mTERF 110 255 IPR003690 GO:0003690|GO:0006355
Dod05g2707 403 PANTHER CGI-12 PROTEIN-RELATED 51 399 IPR003690 GO:0003690|GO:0006355
Dod05g2707 403 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 51 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2707 Dod-Chr5 53210851 53213480 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dod05g2707 mTERF 5.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2707 K15032 - gmx:102666739 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2707 05 53210851 53213480 Dod03g1343 03 17076567 17079078 PCT