Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2689 ATGCAGAACGAGGAGGGGAAGCTTACTGAGCTATACGTTCCAAGGAAATGCTCTGCCACTAACAGACTGATAACTGCAAAGGACCATGCCTCTGTTCAGATTAACATTGGCCATTTGGATGAGAGTGGTGTCTACAATGGTCACTTCTCCACATTTGCCCTCTGTGGTTTTATCCGAGCACAGGTCTGTATAATTTGTTTCACTATATTCCTGATACATTTTGGTTTGTTATCACTGGATTCTTTCCCTTACAAGTAG 258 0.4264 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQINIGHLDESGVYNGHFSTFALCGFIRAQVCIICFTIFLIHFGLLSLDSFPYK* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2689 85 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Dod05g2689 85 Gene3D - 1 65 IPR038579 -
Dod05g2689 85 PANTHER 40S RIBOSOMAL PROTEIN S21 1 62 - -
Dod05g2689 85 PANTHER 40S RIBOSOMAL PROTEIN S21 1 62 IPR001931 GO:0003735|GO:0005840|GO:0006412
Dod05g2689 85 Pfam Ribosomal protein S21e 1 61 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2689 Dod-Chr5 53038680 53040219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2689 1 61 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 80.328 6.97e-36 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2689 K02971 - gmx:100817753 123.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2689 05 53038680 53040219 Dod03g1331 03 16927477 16929317 PCT