Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2663 ATGGACAAAGGCAACAATGGCAAGGAAACCGAATACGACGTAAAGGGCTACGCCCTCAGCGGCAAGATAATGCTGATCTCCATCGTCATTCTCTTCATCATCATCGTCATCATGCTCTGCATCCACGCCTACGCCCGATGGTACCTCCAACGTACTCGCCGCAGCATCCGCCGCAGCAACCACCGCCGCAGAGCTAGCCGCTCCCACCTCATCTTCTACGTAGACCCCTCCGTGATGGCGGCCACGCGCGGCCTCGACACCGCCGTGATCGCCTCCCTCCCCGTCTTCATCTTTTCTCCCAAGACCCACCCGGACCCCATCGACGACTGCCCCGTTTGCCTCTCGGAGTTCGAGGAAGGGGAAACGGGTCGGGTCTTGCCCAAGTGCAACCATACCTTCCACACTGAATGCATCGACATGTGGTTCCAGACACACTCCACGTGCCCTCTTTGCAGGGAACCAGTAGAGCCACTGACCCGACCCGAATTGGTGGTAAGTGTTTGTGAACCTGAAACGGGTTCGAGTTCCGGTTTGTGCGAGGAGTGCCAGCTCGGAGAGGATGAGCAGAACCGGACCGAACCGGTGGGTTCATCTTCGACGACGTCGGATGGGTTGGTGCGGAAACCGTCGTCGCTTGTGGGTGTGAGCGTTGAGGTGCCCGTAAGGAACGACGAGTCGTGTTGTGACTCGTCATCGTCGTCGTTTCGGTCGTCTTCTTCGTCGTTCCGGTCGCCGATGAGTCGCGTGATGTCGTTGAAGAGGATTCTCGGCAGAGAGAGGAAAGCGAGCGTTTCGCCGTCGTCGGGTTGCGCCGCTGGGTGCAGCTCCTCCACGGCCGAGTTTGACGCGGAGCGTGGCGAACGAGTGGAGATTCAGTGA 879 0.5916 MDKGNNGKETEYDVKGYALSGKIMLISIVILFIIIVIMLCIHAYARWYLQRTRRSIRRSNHRRRASRSHLIFYVDPSVMAATRGLDTAVIASLPVFIFSPKTHPDPIDDCPVCLSEFEEGETGRVLPKCNHTFHTECIDMWFQTHSTCPLCREPVEPLTRPELVVSVCEPETGSSSGLCEECQLGEDEQNRTEPVGSSSTTSDGLVRKPSSLVGVSVEVPVRNDESCCDSSSSSFRSSSSSFRSPMSRVMSLKRILGRERKASVSPSSGCAAGCSSSTAEFDAERGERVEIQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2663 292 MobiDBLite consensus disorder prediction 186 209 - -
Dod05g2663 292 Pfam Ring finger domain 108 152 IPR001841 -
Dod05g2663 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 225 - -
Dod05g2663 292 MobiDBLite consensus disorder prediction 224 247 - -
Dod05g2663 292 SUPERFAMILY RING/U-box 89 158 - -
Dod05g2663 292 PANTHER RING-H2 FINGER PROTEIN ATL64 9 225 - -
Dod05g2663 292 CDD RING-H2_EL5_like 109 152 - -
Dod05g2663 292 MobiDBLite consensus disorder prediction 225 247 - -
Dod05g2663 292 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Dod05g2663 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 159 IPR013083 -
Dod05g2663 292 SMART ring_2 110 151 IPR001841 -
Dod05g2663 292 MobiDBLite consensus disorder prediction 190 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2663 Dod-Chr5 52805476 52807254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2663 15 286 Rapid Response to Elicitors AT3G16720 45.763 8.08e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2663 - - pvy:116135583 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2663 05 52805476 52807254 Dod05g2663 05 52805476 52807254 ECH
Dod05g2663 05 52805476 52807254 Dod03g1304 03 16619979 16621467 PCT