Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2652 ATGTGTGGGGGTGCCATAATTTCTGATTCGGCGGAGGATGTGAAGCTGAAGCGTGAGCGGAGAGTACTGGCCACCACCCGGGATCTCTGGTCTGAGCTTGATACTTTCTCTGACCTCCTTGGTTTTGACTGCTTCTTCTCTTCCAAATTACCCATCCCCAACAACCAAGGTACCTACCTACAACTTTCAATTCTACCTAGGATCCTGTCAGTGTCTAGGGCTAGCTATTGGTGGGATGTGAGAAGAAAGGCACTGCTGCAGAAAAGGGAACAGGTAAGAGTAGTGCAGGTGAGGGTATTAGTGATCAGCGCAAGGCCCAGGCCCCAGCGAGGTAGGAAGAACGTGTACAGAGGAATAAGGCAGAGACCATGGGGGAAGTGGGCCGCTGAGATAAGGGACCCACACCAGGGAGTGAGGGTGTGGCTCGGCACCTTCAACTCCCCCGAGGAAGCCGCCCGCGCTTACGACGCCGCCGCCACCCGCATCCGCGGACACAAGGCTAAGCTCAACTTCCCCCTCCCCCAGGCCCCCAACCCCAAGAAGCCCCGCCTCACCCTCGATTTCACTCAGCCCATTGGGCCTCCCCCGTCGACCGTCACCAACCACGGTGGCCCAAGTGATGGGAATCTCGATGATCTCAAGCACCAACTCTCGAGCCTGGAATCGTTCCTTGGATTGGAGGATGAGCCTGCTGCTGCTAATCCTCCTCCTCCTCATGATGATGATCGTTATCACGATCACGTGGTTGGCGAGTGGGACTCGGTTTCCAACACCACCAAGGACCTGTGGATGCTCGTCGACGTCATCATGCCAAATCACCACTTGCTGATCTGA 834 0.5624 MCGGAIISDSAEDVKLKRERRVLATTRDLWSELDTFSDLLGFDCFFSSKLPIPNNQGTYLQLSILPRILSVSRASYWWDVRRKALLQKREQVRVVQVRVLVISARPRPQRGRKNVYRGIRQRPWGKWAAEIRDPHQGVRVWLGTFNSPEEAARAYDAAATRIRGHKAKLNFPLPQAPNPKKPRLTLDFTQPIGPPPSTVTNHGGPSDGNLDDLKHQLSSLESFLGLEDEPAAANPPPPHDDDRYHDHVVGEWDSVSNTTKDLWMLVDVIMPNHHLLI* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2652 277 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677
Dod05g2652 277 PANTHER DNA-BINDING DOMAIN 1 194 IPR044808 GO:0003700|GO:0009873
Dod05g2652 277 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Dod05g2652 277 PANTHER EREBP TRANSCRIPTION FACTOR 1 194 - -
Dod05g2652 277 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700|GO:0006355
Dod05g2652 277 MobiDBLite consensus disorder prediction 169 213 - -
Dod05g2652 277 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Dod05g2652 277 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Dod05g2652 277 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Dod05g2652 277 CDD AP2 116 172 IPR001471 GO:0003700|GO:0006355
Dod05g2652 277 MobiDBLite consensus disorder prediction 191 205 - -
Dod05g2652 277 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2652 Dod-Chr5 52739402 52740956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2652 1 269 AP2-EREBP Transcription Factor Family AT3G16770 39.799 1.45e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod05g2652 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2652 K09286 - fve:101293287 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2652 05 52739402 52740956 Dod03g1286 03 16374308 16376974 PCT