Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2642 ATGGCTTCAACGGACATCAGAGACATTCTTACGGCTTTTAGTCCTTCTTTCGACTTCTTCGCCATCTCCACCGGCGATGGCCGCGTTAAGATATGGGATACACTGAAGGGTCAGGTTCAGACAGAGTTTGCAGATTTGACATCAAATGACACAACAAGTCTATATGATAAATCCATGAAGGGGCATCTTTCAATGGATTATACATGCATGAAGTGGTTGTCTTTGGAAAGAAAGAAGAAAAGGAAGCATGCTTCCTCATTGTTAGTGCTTGGAAGTGGTAGTGGTGATGTTTTAGCATTGGATGTGTTTGCTGGTCAATTGAGTTGGAGAATTAGTGACTGTCATCCTGGAGGTGTGAGAGCCATTTCATCTTCAGCAAACGAATCCTGCATTTATACTGCAGGTGCAGATGGGATGGTATGCAAAATAGATTTCATGACAGGAAATCTGTTGGAGAAATTTAAAGCTTCTACAAAGGCAGTATCCTGTATGTCTGTTTCTTCGGATGGGAAAACATTAGCTACTGCAGCAGCCCAATTGAAGATCTTTAAATGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGGTGCTTGGTATTCACTGAAGATGGAAAGTATATCCTCTCATCTGCTGTTGGTGAAAGATATGTTGCTATGTGGGGGATAGATGGCGCCAGTAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCATCCTGCTGTCTTCCTTGATAGCAGGTGTGTTGATAGCGAGGAACATGATGAGGCTGGCATATGTGTTTTGGCCATCTCAGAAGTTGGTGTTTGTTATTTCTGGTTTGGAAATAGTATTGAAGAACTACGGAATGCAAAGCCCGCAAAAATATTGTTATCTTCAGAAGATATGTCCTCCAGGAATTACAAGGGAGCATTGCCATCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCTGCCTCCGGGCATGTTTTTCTTGTTTATGGGTTGCTTGTAAAACCATCGTTTCAAAAAATTCTAGTGCATTGTGGTGTAGATGTAAAGTTGAATGTCTCCCGTGATGGTATTCTTCTTCCAATGAGTCAATCTCTTCTTAAATCTAAGAAGGGGACAGATGGACGAAAAGTAACTGCACTAGACCGTGCTAATGCAGAAGACGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTTATGGGAAAGAAGCATTTCAAGATTCTACAGACAAAGATGTAACAGATGATTTGATTATAATTGGTAAAGCTGATTCTCTTGAGAAACAAGATGATATAATCCAAGATGACATTGATGCAAATAATATGGAGGACCAACTGAGATCACTGGGGATACTTCAAAGTGAAAATGGTTGTGCCTCAAACCATGAACTCTGTTCTACATTGTTGAAGGGTATTGATATCGAAGCGCCTATTCCGATGAAAAAGATAAAATCAGTTATTTTGTCTATGGAGCCAAGTGAAGCATTCAAGCTACTGGAACTGTTACTGGCTGCTTTGCAATCAAGCAGCTCATCTAGCGGAAAGTATGTTCTTCCCTGGATATATAGCATATTAGTGAATCATGGTCACAGTGTCATTTCCAAGGAATCTGTGACACGCATACTTGATTCCTTATACAAGATTACCAATTCTAGAGGGCCTACTCTTCAGTCATTATTACAATTATCAGGTCGCCTGCAACTAGTGACATCTCAGATTGACAAGGCTTCTCAGACCAAAAGTCATTCAGTGCATGATCTTCCAATGGATGAAAGTGGTGATGAGGATGAAGAGGAGGAATATTTTCATGAAGGAGATGATGCCTCTGAAATAAGCAGTGATGATGAAAACTAG 1863 0.4058 MASTDIRDILTAFSPSFDFFAISTGDGRVKIWDTLKGQVQTEFADLTSNDTTSLYDKSMKGHLSMDYTCMKWLSLERKKKRKHASSLLVLGSGSGDVLALDVFAGQLSWRISDCHPGGVRAISSSANESCIYTAGADGMVCKIDFMTGNLLEKFKASTKAVSCMSVSSDGKTLATAAAQLKIFKCSNHKKIQKFSGHPGSVRCLVFTEDGKYILSSAVGERYVAMWGIDGASKQSASCVLAMEHPAVFLDSRCVDSEEHDEAGICVLAISEVGVCYFWFGNSIEELRNAKPAKILLSSEDMSSRNYKGALPSIYAAKLQGIQKPASGHVFLVYGLLVKPSFQKILVHCGVDVKLNVSRDGILLPMSQSLLKSKKGTDGRKVTALDRANAEDALLPIPKVFDSYGKEAFQDSTDKDVTDDLIIIGKADSLEKQDDIIQDDIDANNMEDQLRSLGILQSENGCASNHELCSTLLKGIDIEAPIPMKKIKSVILSMEPSEAFKLLELLLAALQSSSSSSGKYVLPWIYSILVNHGHSVISKESVTRILDSLYKITNSRGPTLQSLLQLSGRLQLVTSQIDKASQTKSHSVHDLPMDESGDEDEEEEYFHEGDDASEISSDDEN* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2642 620 SMART WD40_4 2 33 IPR001680 GO:0005515
Dod05g2642 620 SMART WD40_4 104 144 IPR001680 GO:0005515
Dod05g2642 620 SMART WD40_4 147 184 IPR001680 GO:0005515
Dod05g2642 620 SMART WD40_4 187 227 IPR001680 GO:0005515
Dod05g2642 620 MobiDBLite consensus disorder prediction 580 620 - -
Dod05g2642 620 MobiDBLite consensus disorder prediction 593 620 - -
Dod05g2642 620 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Dod05g2642 620 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Dod05g2642 620 PANTHER OS03G0300300 PROTEIN 1 620 - -
Dod05g2642 620 PANTHER OS03G0300300 PROTEIN 1 620 - -
Dod05g2642 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Dod05g2642 620 Gene3D - 7 300 IPR015943 GO:0005515
Dod05g2642 620 SUPERFAMILY WD40 repeat-like 12 229 IPR036322 GO:0005515
Dod05g2642 620 Pfam Dip2/Utp12 Family 481 573 IPR007148 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2642 115 226 U-box Gene Family AT2G33340 28.448 1.15e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2642 K14546 - gmx:100784148 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2642 05 52645367 52651891 Dod05g2642 05 52645367 52651891 ECH