Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2633 ATGTCGACGGTCACGTCCGGTGCGCCGGCGAGTTTCGCCGACGCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTCGTGGTAGACGATGATCCCACGTGTCTCATGATTCTTGAGAAGATGCTGCGCACTTGTCTCTACGAAGTTACCAAATGCAATCGGGCTGAGATAGCACTCTCACTTCTGAGGGAGAAGAAAAATGGGTTTGACATTGTTATAAGTGATGTGCATATGCCAGACATGGATGGATTCAAACTTTTAGAGCACATTGGGTTGGAGATGGACCTTCCTGTCATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTAACACATGGTGCTTGTGATTACCTCATTAAACCTGTTCGCATAGAGGCTTTGAAGAACATATGGCAGCACGTGGTTCGCAAGAGAAAGAATGAGTGGAAAGATACGGAGCAGTCAGGTAGTGCCGAAGAAGGAGATCGGCAGCAAAAGGCATCTGATGATGCTGATTACTCATCCTCTGCAAATGAAGGCAATTGGAGAAACTCAAAGAAGAGGAGGGATGATGAAGAGGAAGCAGAGGACAGAGATGACACATCCACATTAAAGAAGCCCCGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTGTAGCTGCTGTAGATCAACTGGGAATTGACAAGGCTGTACCTAAAAAAATTCTGGAATTGATGAACGTCCCTGGACTCACCAGAGAAAATGTAGCCAGCCATCTCCAGAAATACCGTTTGTATCTTCGAAGGCTGAGTGGGGTTTCTCAGCACCAGAGTAACTTGAACAACTCCTTCATAAGCCCACAAGAGGCAACATTTGGGACAATTTCTTCAATTAATGGAATTGATATACAAACTCTTGCTGCTACTGGGCAGCTCCCAGCCCAAAGTCTAGCCACACTTCAGGCAGCAGGACTTGGTAGGTCAACTGCAAAAGCAGGCTTACCCATGCCCCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCGAGGTTGAGATTTGGTGAAGGGCAACAACAACAACATTTGAATAGTAGTAAACCAATGAACTTACTTCATGGAATCCCCACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAATCTTCCCAATCCCTTGGCAACTTGAATATGCGAGTCAATGCTTCTGCTTCGCAGAGCAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCCCATGCTAAGTGAAAATACTGGGCCTCAGGCTCCCAGACTTCCATCATCTTTGGGGCAGCCTACTGTATCAAATGGAATTTCTAATGGTTTTCTGAGCAGAAATGGGATTGCTGGTAATAACAGAGCACCTGGTTATAATCCTGTTCCACAAAGCTCTTCAATGTTGAGTTTTCCCATGAATCAAACCACTGATATGTCTGCCAGTAGTTTCCCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCGTTTCAAGACGAAGCTACTTCCAGAATTAAAGGATCTGGTGGATTTGTTCCAAATTATGATATTTTTAGTGAACTGCATCATCAGAAACCTCAAGATTGGGAGATAACAAACCCAGGCCTGACATATGATACCTCGCAGCATGCAAATCCTTTACATGGTAAGATTGATGTCTCCCCCTCAGTTGTAGTCCATCAGAGCTTTTCTTCAAACCAACAGAGTGGACAAAGCAGAGATGCTATGATTGCTAAGCCTATGTTCTCTATGAGTGAAAGCATGGAACAAGGTACTCTCCAAAATGCCGGTGAACACCTTAATACACTTCTGGCTGACAATTCAATAAGGGTTAAGACTGAAAGAATTCCTGATGCAAGCTCCCAGAGTAACTTCTTCCCTGAGCATTATGGGCAGGATGATCTTATGAGTGCGCTTCTGAAACAGCAAGAAGGCATTGGACCAGCTGAGAATGAGTTCGACTTTGATGGATATTCTCTGGATAACATTCCTGTTTAG 2007 0.4494 MSTVTSGAPASFADADQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLREKKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDTEQSGSAEEGDRQQKASDDADYSSSANEGNWRNSKKRRDDEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNLNNSFISPQEATFGTISSINGIDIQTLAATGQLPAQSLATLQAAGLGRSTAKAGLPMPLMDQRNLFSFENPRLRFGEGQQQQHLNSSKPMNLLHGIPTNMEPKQLANLHQSSQSLGNLNMRVNASASQSNPLLMQMAQSQPRGPMLSENTGPQAPRLPSSLGQPTVSNGISNGFLSRNGIAGNNRAPGYNPVPQSSSMLSFPMNQTTDMSASSFPLGSTPGISSITTKGSFQDEATSRIKGSGGFVPNYDIFSELHHQKPQDWEITNPGLTYDTSQHANPLHGKIDVSPSVVVHQSFSSNQQSGQSRDAMIAKPMFSMSESMEQGTLQNAGEHLNTLLADNSIRVKTERIPDASSQSNFFPEHYGQDDLMSALLKQQEGIGPAENEFDFDGYSLDNIPV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2633 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 641 IPR045279 GO:0009736
Dod05g2633 668 MobiDBLite consensus disorder prediction 144 165 - -
Dod05g2633 668 SMART REC_2 22 134 IPR001789 GO:0000160
Dod05g2633 668 PIRSF RR_ARR_type-B 2 660 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dod05g2633 668 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Dod05g2633 668 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 258 IPR017930 -
Dod05g2633 668 CDD REC_typeB_ARR-like 24 138 - -
Dod05g2633 668 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Dod05g2633 668 Gene3D - 199 261 - -
Dod05g2633 668 SUPERFAMILY CheY-like 21 146 IPR011006 -
Dod05g2633 668 MobiDBLite consensus disorder prediction 406 433 - -
Dod05g2633 668 MobiDBLite consensus disorder prediction 178 199 - -
Dod05g2633 668 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Dod05g2633 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 641 - -
Dod05g2633 668 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Dod05g2633 668 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Dod05g2633 668 MobiDBLite consensus disorder prediction 144 199 - -
Dod05g2633 668 Gene3D - 22 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2633 Dod-Chr5 52552709 52556129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2633 56 668 Response Regulator Gene Family AT3G16857 50.842 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod05g2633 Response_reg 8.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2633 - K14491 gmx:100814930 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2633 05 52552709 52556129 Dod05g2633 05 52552709 52556129 ECH
Dod05g2633 05 52552709 52556129 Dod03g1269 03 16040855 16045176 PCT