Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2628 ATGTCGCTGAGGCCAAATGAAAGGACCGAGGTTCGCCGCAACCGCTACAAGGTGGCCGTCGACGCCGACGAGGGTCGCCGGAGAAGAGAGGACAACATGGTCGAGATCCGCAAGAGCAAGCGCGAAGAGAGCTTGCTCAAGAAGCGCCGCGAAGGACTCCAAGCTCACCAGCAGAACCAGTTCCCCGCTACTCTCCAACCTTCCGCCGTCGACAAAAAGTTAGAGAGCCTTCCTTCTATGGTGGCTGGGGTCTGGTCGGATGATAGCAGTCTGCAACTGGAAGCTACCACGCAGTTTCGGAAGCTGCTTTCAATTGAGCGGAGCCCTCCGATTGAGGAAGTTATTCAATCGGGTGTTGTGCCACGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCTCAACTCCAGTTTGAGGCCGCATGGGCTCTCACAAACATAGCATCTGGGACTTCTGAGCACACTAAGGTGGTGATTGATCATGGGGCAGTTCCTATATTTGTCAAGCTACTTAGTTCACCCAGTGATGATGTTCGTGAGCAGGCTGTGTGGGCTCTGGGAAATGTTGCTGGTGACTCACCTAGGTGCCGTGATCTTGTGCTCAGCCATGGTGCCCTGATCCCACTACTGGCCCAGCTGAACGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACTCTCTCAAACTTTTGTAGGGGCAAGCCACAGCCTCCATTTGAGCAGGTGAGACCAGCCCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTTTCTGATGGCACAAACGACAAAATCCAAGCAGTTATTGAAGCGGGTGTATGTGGTCGACTGGTGCAGCTCCTTCTGCACCCATCTCCTTCAGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGATATGCAGACTCAGTGTATCATCAACCATGGTGCTCTCCCATGCCTTTTGAACTTGTTGACAAATACTCATAAAAAAAGCATCAAGAAAGAAGCTTGCTGGACTATATCTAACATCACAGCTGGAAACAGGGAACAAATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTCCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATTTCAAATGCTACATCTGGTGGTACTCCCGAGCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTCTGTGATCTGCTTGTCTGCCCCGACCCGAGAATTGTTACCGTCTGTTTAGAAGGCCTAGAAAATATTCTGAAGGTTGGAGAAGCTGAGAAGAGCCTGGGCAACACTGGAGATGTCAACATGTATGCTCAAATGATAGATGATGCAGAGGGATTGGAGAAGATTGAAAACCTGCAAAGTCATGACAACAATGAAATATATGAGAAGGCCGTTAAAATTCTTGAAACATACTGGTTGGAAGATGAAGATGAGGCACTTCCTCCAGGTGATGGAGCTCAAGCTGGTTTCAATTTTGGAAGCAATGAAGTTCCAGTCCCATCTGGTGGATTCAACTTCAGTTGA 1599 0.4822 MSLRPNERTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAHQQNQFPATLQPSAVDKKLESLPSMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNTHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTPEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNMYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDEALPPGDGAQAGFNFGSNEVPVPSGGFNFS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2628 532 Gene3D - 75 498 IPR011989 -
Dod05g2628 532 Pfam Atypical Arm repeat 459 503 IPR032413 -
Dod05g2628 532 Gene3D - 11 50 IPR036975 GO:0006606
Dod05g2628 532 Pfam Importin beta binding domain 12 97 IPR002652 GO:0006606|GO:0061608
Dod05g2628 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 246 273 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 319 359 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 151 189 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 108 148 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Dod05g2628 532 Pfam Armadillo/beta-catenin-like repeat 404 442 IPR000225 GO:0005515
Dod05g2628 532 PANTHER IMPORTIN ALPHA 2 523 - -
Dod05g2628 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 372 IPR000225 GO:0005515
Dod05g2628 532 PANTHER IMPORTIN SUBUNIT ALPHA 2 523 - -
Dod05g2628 532 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Dod05g2628 532 SMART arm_5 361 401 IPR000225 GO:0005515
Dod05g2628 532 SMART arm_5 318 359 IPR000225 GO:0005515
Dod05g2628 532 SMART arm_5 150 190 IPR000225 GO:0005515
Dod05g2628 532 SMART arm_5 235 274 IPR000225 GO:0005515
Dod05g2628 532 SMART arm_5 276 316 IPR000225 GO:0005515
Dod05g2628 532 SMART arm_5 404 444 IPR000225 GO:0005515
Dod05g2628 532 SMART arm_5 191 233 IPR000225 GO:0005515
Dod05g2628 532 SMART arm_5 107 148 IPR000225 GO:0005515
Dod05g2628 532 PIRSF Importin_alpha 2 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Dod05g2628 532 SUPERFAMILY ARM repeat 6 503 IPR016024 -
Dod05g2628 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 400 IPR000225 GO:0005515
Dod05g2628 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Dod05g2628 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2628 Dod-Chr5 52517373 52521764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2628 133 393 U-box Gene Family AT3G46510 24.904 3.54e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2628 K15042 - gmx:100792804 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2628 05 52517373 52521764 Dod03g1266 03 16012598 16016240 PCT