Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2623 ATGGGGAGAGCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAAGGGAAGATGGACTGCTGAAGAGGACAGGATCTTGACTGATTACATCCAAGAAAACGGCGAGGGATCTTGGAGACTGAGATGGATCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCGGAGGAGGAAGAGACCATTGTCAAATTGCATGCTGTTCTCGGTAATAGGTGGTCTGTGATAGCGGGGCATTTACCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAATCCTTAAATGAGTCCTTGCCTCCCATTGACATGGCTGCATTAAACGCTGCTACGTCCAAAAGAAGAGGGGGTACTCGAGGAATAACTGCAACTCAAGCAGCCAAGCAACAAGAAGACAAGAACATGGTCTACAACGTGCAAAGATCCTCAGAATTAGGGAACACAAAGAGAAACGAATCTTGGCAAAGTAGTTTCAATGCTGAAGTGGACATAGAAGGCTTTGCTGGTTTGGAACCTTATTGTGTGATGGGGTACAACGACATAAGTGGCACCACAGTTGAATCATCATGCCCCAGCATCAAAGGAGAAGTTGAGGAATTGGGACCATATGAATGGCTAGATGATGAAATTACGAAACTCAGTTACATGTTTGAAAGTGGGATGCTTGTGAACCATGGTGGGAATATTGTAACCAATATTATTGATGAGGACTCTAGCATGAATGAATGTGGACTAGTGGATGAGGAGATGATATTGGAAACAAATGAGGACAACAAGAGTGGTGTTTGGAGCTTCAGCTCATCAAATGCAGAGAGTGGAGAGTGGAACACCACCAGCTGCCCTTCAGTGAATTATGTGTATGAATATCAGTGGCCTGATGTGCAATTGGCAGGTAGTGTTCAATCCTATAATCAATGGGACCTTTGTGAAGAAAACCAGATGGCTCCAAGCTGGTGGGGTTCTACCAACGCTGAATCTTCGCCGTCGGGATCCAGCCACCACCACCGTGAAAAGGATCCGGTGTCCTCTTCCTTCGCGAAGGTTCTCTGGACCTCATCGTCGAGTCCACTTCTCACCTTCACAGTGAAGGCAGCGAGCGACGGAGGGTTCATTACCGGCATGGCTAAGTTAGCTCCGTCACCGCCACTGGCTAGAACTAGAGCGTCACCCTCGAAGCCACCTCGCGTGTGGAGTTCTGTTCTAAGCAATCTTCAACTCGGCGGTTCGTTCTGCCTTTCCCTTTTGATTTTGATTTTTCTTAATCCCGATTGCTTATTACTGTGGCTTTGA 1326 0.4646 MGRAPCCEKVGLKKGRWTAEEDRILTDYIQENGEGSWRLRWINYLRSDVKRGNITPEEEETIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDMAALNAATSKRRGGTRGITATQAAKQQEDKNMVYNVQRSSELGNTKRNESWQSSFNAEVDIEGFAGLEPYCVMGYNDISGTTVESSCPSIKGEVEELGPYEWLDDEITKLSYMFESGMLVNHGGNIVTNIIDEDSSMNECGLVDEEMILETNEDNKSGVWSFSSSNAESGEWNTTSCPSVNYVYEYQWPDVQLAGSVQSYNQWDLCEENQMAPSWWGSTNAESSPSGSSHHHREKDPVSSSFAKVLWTSSSSPLLTFTVKAASDGGFITGMAKLAPSPPLARTRASPSKPPRVWSSVLSNLQLGGSFCLSLLILIFLNPDCLLLWL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2623 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 39 IPR017930 -
Dod05g2623 441 PANTHER MYB TRANSCRIPTION FACTOR 2 304 - -
Dod05g2623 441 ProSiteProfiles Myb-like domain profile. 46 96 IPR001005 -
Dod05g2623 441 MobiDBLite consensus disorder prediction 331 350 - -
Dod05g2623 441 Gene3D - 55 100 - -
Dod05g2623 441 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 304 - -
Dod05g2623 441 SMART sant 13 47 IPR001005 -
Dod05g2623 441 SMART sant 50 98 IPR001005 -
Dod05g2623 441 SUPERFAMILY Homeodomain-like 11 92 IPR009057 -
Dod05g2623 441 ProSiteProfiles Myb-like domain profile. 9 38 IPR001005 -
Dod05g2623 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 100 IPR017930 -
Dod05g2623 441 CDD SANT 55 96 IPR001005 -
Dod05g2623 441 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Dod05g2623 441 Gene3D - 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2623 Dod-Chr5 52469951 52475035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2623 1 137 MYB Transcription Factor Family AT2G47460 59.748 4.77e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod05g2623 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2623 K09422 - gmx:100805532 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2623 05 52469951 52475035 Dod05g2623 05 52469951 52475035 ECH