Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2616 ATGGCAAATAACTTAACGGGGCAGTTGGTGGGGTCAGAGATACATGGATTCCACACATTGCAAGAGCTGGACGTGGGAAGCATAACGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTTTGTAATTACAAGTATTTCACCATCAATGTCAAGCCAGTGAATTTGCCCACAAGTGGTACTATTGTATTATTTGACCGCAAAATGCTTAGGAACTTCCGAAAAGATGGGCACAATTGGAAAAAGAAAAAGGATGGTAAAACTGTTAAAGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGCGAAGATAACCCAAGCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGCCTGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGTTGCAAGGTTCTCCTGTCACACCCAAAAATTCAAACTCTAGTTCTGTCTCTGATCCAAATGGTCCATGGATTTTATCTGAAGAAATAGATTCAGGGATCAAAACTGCACATACTGGTGAGATTAATGACCATGTAACCATCAAAAGTCATGAACAGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTTAACACGTCTATTGTGCCTAATGGAGGCAAAGTTCCATATTTTGATCAACAAAATCAAATTTTACTGGATGACAATTTCAGCAATGTAGCCAGCAATCCATCTGCAGAAATTCCTTCTTTTGGTAATTTAACTCAGCCAATTGCTGGGAGCAATTGTATTCCTTACACTTTTTCGGAAAATGTTAATCTTCAGACAATGAACAATCAAATAGATCCAAATGAGCGGACAAATCATACTCTATCTGTAAACAGTGTTGATTCCTTGAACACTTTTGTGAATAATGGCTTGCAAAGTCAAGACAGCTTTGGAATGTGGGTGAATAACATATTGTCTGATTCACCATGTTCCGTAGATGAGTCAGCTGTTGAATCATCAGTTTCATCTGTTCATGAATATTCATCTCTGGTAGTGGATGATCAGCAAGGTTCTTTGCCAGATCAAGTATTTAATCTCACTGAGGTGTCCCCTGCATGTGTGTCTTCCACCGAGAAATCAAAGGTCCTGGTGACTGGATTTTTTCATAAGGACTATCTTCACCTTTCAAAGTCCAATCTACTGTGTGTCTGTGGTGATATAAGTGTTCCGGCAGAAATTGTTCAGGTTGGGGTCTACCGATGCTGGGTACCTCCACATTCCCCTGGATTTGTGAATCTTTACTTGAGCTTTGATGGCCATAAGCCCATTAGCCAAGTTGTTAATTTTGAGTATCGTTCTCCTGTTCTGCACGAGCCTGCAGCTTGTATGGCAGATAAAGACAATTGCGATGAGTTCTGGCTCCAGATGAGGCTTGCTTATCTTCTTTTTGCTAAACAAAAGAGCCCTGATGTTTTCTCTAGTAAAGTATCACCTAATGTACTAAAGAAGGCTAGGAAATTTGCCATCAAAACATCATTTATTTCCAGTAGTTGGCAAAACTTGATCAAGTCCACTGAAGACCACAAAATTCCATATTCACAAGCAAAGGATGACTTATTTGGCATTGCATTGAAAAGCAAACTAAAGGAATGGATTTTGGAAAGAATTGTTCTAGGCTCTAAGACTGCTGAATATGATGCACAAGGCCAAAGTGTAATCCATTTGTGTGCAATTCTGGGATATACTTGGGCTGTTTCTTTATTTTCATGGTCTGGCTTGTCACTAGATTTCCGTGACAAATTTGGATGGACAGCACTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACCCTGTTGTCTGCTGGGGCAAAGCCAAATTTGGTCACGGATCCAACTCCACAAATTCCGGGTGGACAAACTGCTGCTGATCTTGCATATAGGAAAGGTTATGATGGCTTAGCAGCTTATCTTTCAGAGAAGGCTCTGGTTGAGCATTTCAACGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGATACCAGCACAACTGACTCAGCAAATCCTGAGAACCTCACAGAGGACCAGCTGTACATGAAGGATACACTGGCAGCTTATCGAACAGCTGCTCAAGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCCTTTAAACTGCAAGCTAAAGCCGCTGAGCTTTCTTGTCCAGAGGATGAAGCACGCAAAATAGTTGCAGCATTGAAGATTCAGCATGCCTTTAGGAACTTCGAGACAAGGAAAATGATGGCAGCTGCTGCACGCATTCAGTACACATTCCGCACGTGGAAGCTTCGTAAAGAATTTCTCAACATGCGTCGTCAGGCTATTAAAATTCAAGCTGCTTTCCGGTCCTTTCAAGAGAGGAAGACTTACCGTAAAATTCTTTGGTCTGTCGGGGTGGTTGAGAAAGCAGTGTTGCGTTGGCGGTTAAAGAGAAAGGGGTTGCGTGGGATGCATGTTAAGGCTGCCGCTGATCAGAAGCAGGAAAGTGATGTAGAGGAGGAATTCTTTCGGGCTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAACAAGACTATAGGAGGATGAAGCTGGCACTTAATCAAGCAAAGCTGGAACGGGAATATGAAGAACTCCTCAATAACGAAGTTAACATGGAAGTCAAAACATAG 2757 0.4204 MANNLTGQLVGSEIHGFHTLQELDVGSITEEARTRWLRPNEIHAILCNYKYFTINVKPVNLPTSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPSFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTPKNSNSSSVSDPNGPWILSEEIDSGIKTAHTGEINDHVTIKSHEQRLHEINTLEWDDLVVANDLNTSIVPNGGKVPYFDQQNQILLDDNFSNVASNPSAEIPSFGNLTQPIAGSNCIPYTFSENVNLQTMNNQIDPNERTNHTLSVNSVDSLNTFVNNGLQSQDSFGMWVNNILSDSPCSVDESAVESSVSSVHEYSSLVVDDQQGSLPDQVFNLTEVSPACVSSTEKSKVLVTGFFHKDYLHLSKSNLLCVCGDISVPAEIVQVGVYRCWVPPHSPGFVNLYLSFDGHKPISQVVNFEYRSPVLHEPAACMADKDNCDEFWLQMRLAYLLFAKQKSPDVFSSKVSPNVLKKARKFAIKTSFISSSWQNLIKSTEDHKIPYSQAKDDLFGIALKSKLKEWILERIVLGSKTAEYDAQGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQIPGGQTAADLAYRKGYDGLAAYLSEKALVEHFNDMSLAGNISGSLDTSTTDSANPENLTEDQLYMKDTLAAYRTAAQAAARIQAAFREHSFKLQAKAAELSCPEDEARKIVAALKIQHAFRNFETRKMMAAAARIQYTFRTWKLRKEFLNMRRQAIKIQAAFRSFQERKTYRKILWSVGVVEKAVLRWRLKRKGLRGMHVKAAADQKQESDVEEEFFRAGRKQAEERVERSVVRVQAMFRSKKAQQDYRRMKLALNQAKLEREYEELLNNEVNMEVKT* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2616 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 918 - -
Dod05g2616 918 SUPERFAMILY Ankyrin repeat 555 666 IPR036770 -
Dod05g2616 918 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Dod05g2616 918 SMART ANK_2a 604 633 IPR002110 GO:0005515
Dod05g2616 918 MobiDBLite consensus disorder prediction 148 167 - -
Dod05g2616 918 Gene3D - 535 674 IPR036770 -
Dod05g2616 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 918 - -
Dod05g2616 918 Coils Coil 881 917 - -
Dod05g2616 918 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Dod05g2616 918 SMART iq_5 790 812 IPR000048 GO:0005515
Dod05g2616 918 SMART iq_5 867 889 IPR000048 GO:0005515
Dod05g2616 918 SMART iq_5 767 789 IPR000048 GO:0005515
Dod05g2616 918 SMART CG_1_2 28 146 IPR005559 GO:0003677
Dod05g2616 918 Gene3D - 767 815 - -
Dod05g2616 918 Gene3D Immunoglobulins 363 458 IPR013783 -
Dod05g2616 918 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Dod05g2616 918 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Dod05g2616 918 ProSiteProfiles IQ motif profile. 869 897 IPR000048 GO:0005515
Dod05g2616 918 SUPERFAMILY E set domains 368 455 IPR014756 -
Dod05g2616 918 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Dod05g2616 918 Pfam Ankyrin repeats (3 copies) 555 633 IPR002110 GO:0005515
Dod05g2616 918 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Dod05g2616 918 Pfam IQ calmodulin-binding motif 770 788 IPR000048 GO:0005515
Dod05g2616 918 ProSiteProfiles IQ motif profile. 768 797 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2616 Dod-Chr5 52405060 52413187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2616 28 901 CAMTA Transcription Factor Family AT3G16940 54.432 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Dod05g2616 CG-1 4.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2616 K21596 - gmx:100793970 1463.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2616 05 52405060 52413187 Dod05g2616 05 52405060 52413187 ECH
Dod05g2616 05 52405060 52413187 Dod03g1244 03 15721047 15732859 PCT