Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2572 ATGGAAGGAAGGAAGAGAGAGAATAAGAAGAAGAAGGAGGAGGAGCAGGAAGCACAAGCATCACAACCAGCTGCAAAGTCGTCGTCATCATCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGATGAGATTCCGAACACAAACACGAGCACCAACACCTTCACTTTCTCATCAAGCATCTTTGACATGATGCCACCACCACCATCAACACCATTCGATCAAAAAGCTTCTTCCTTTGCTGGCTTCATGGACTTGCTCGCTGTCCATGACTACACCCCTTCTTTATTCGATTGGCTCCCCAACACCACCAACTCCTCCGCCGTCGCCACCGAAATCAGCCACCAGCCTCTTCCGTCGCCGGCGAGCTCTAATGTCCCCGACTGCTCCGAGGTGTTGAACACTCCGGCGTCACCAAACTCGTGCTCGATTTCGTCGTCGTCGAACGAAGCCGCCGCTACCAACAACAACATCGAAGGTGGGAAAGTAGTTGGGGATGAACACGAAGCAGAGGATGAGGATGGAGATGGAGATGAAGGTAAAGGAGAAGATCAAGACCAAGACAAGACTAAGAAACACCTGAAACCAAAGAAGAAGAACCAAAAGAAGCAAAGAGAGCCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCACCTAGACGATGGCTATAGGTGGCGCAAGTACGGCCAAAAAGCCGTGAAAAACAGCCCCTATCCCAGGAGCTACTACCGTTGCACCACTGCAGGTTGTGGCGTGAAGAAGCGCGTGGAGCGTTCCTCCGACGACCCTTCCATCGTGGTCACCACCTACGAAGGCCAGCACACCCACCCTTGCCCCGCCACGTCACGCGCTACCCTCGGCTTCATGCACGATGCCGCTGGTGGGTTTATTGGATCCGGTGGTGCTCTTGGTTCTCCACATCATCACTTTGTGCTGCCACAACAGCACCACCAGTTTCAGCATCACAATAGTGTTCCACAAGCTTTGTTATATAACTCCACTGCTCCACCTAACGTGAATATTGTTAGCTCCTCTTCTTCTACTACTAGTTATAATGTGAATGCGTCGTCGTTTGGTAGCCTCGTGCTTCAGAATCAAGAGGGTCAGCGTCATCGAGGTTTTGCACCGTCTTTGTTGAGGGACAATGGGCTTCTTGAGGACATTGTGCCGACGCAGATGAGGAAAGAGGAGAAGGAACAAGAGTAG 1209 0.512 MEGRKRENKKKKEEEQEAQASQPAAKSSSSSSSTMANSVAFSDEIPNTNTSTNTFTFSSSIFDMMPPPPSTPFDQKASSFAGFMDLLAVHDYTPSLFDWLPNTTNSSAVATEISHQPLPSPASSNVPDCSEVLNTPASPNSCSISSSSNEAAATNNNIEGGKVVGDEHEAEDEDGDGDEGKGEDQDQDKTKKHLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPATSRATLGFMHDAAGGFIGSGGALGSPHHHFVLPQQHHQFQHHNSVPQALLYNSTAPPNVNIVSSSSSTTSYNVNASSFGSLVLQNQEGQRHRGFAPSLLRDNGLLEDIVPTQMRKEEKEQE* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2572 402 MobiDBLite consensus disorder prediction 1 19 - -
Dod05g2572 402 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 390 IPR044810 GO:0003700
Dod05g2572 402 SMART WRKY_cls 220 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g2572 402 MobiDBLite consensus disorder prediction 20 53 - -
Dod05g2572 402 MobiDBLite consensus disorder prediction 1 53 - -
Dod05g2572 402 MobiDBLite consensus disorder prediction 113 156 - -
Dod05g2572 402 Gene3D WRKY domain 204 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod05g2572 402 MobiDBLite consensus disorder prediction 113 210 - -
Dod05g2572 402 ProSiteProfiles WRKY domain profile. 215 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g2572 402 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 80 390 - -
Dod05g2572 402 SUPERFAMILY WRKY DNA-binding domain 212 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod05g2572 402 Pfam WRKY DNA -binding domain 221 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2572 Dod-Chr5 51980161 51983695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2572 27 397 WRKY Transcription Factor Family AT5G49520 43.117 1.25e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dod05g2572 WRKY 2.8e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2572 05 51980161 51983695 Dod05g2572 05 51980161 51983695 ECH
Dod03g1198 03 14957736 14960714 Dod05g2572 05 51980161 51983695 PCT