Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2570 ATGACGTACCAGAACAACTCCCGCCGGAGCCCCGCTCCCTACCGCTCCGGCGGCCGCGGCTTCCACAGCCCGTCGCGTCGCTCTCCCGGAAGAGGTGGAGGTTTCCGCCCAATCGGCGGCGGTGGCGACGGGTTCAGGCCGATGAGAGGTGACGGTTACGGAGACTACGGGTTCAACAGTTACCAGGCTCCGCCACTGTCTGGTCACAAGCGAGGGTTTCGCGGAGGTTCACCCGATCGTTTTGATGGTGGGAATTTTGCCAAACTATTTGTTGGATCTGTGCCCCGAACAGCCACTGAAGACGATATTCGGCCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTGATCAAAGATAAAAAAACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCGTTGCACAATCAGCATACTCTTCCTGGAGGCATTGGTCCAATCCAAGTGAGGTATGCGGACGGTGAACGAGAACGCCTTGGTGCAGTTGAGTACAAATTATTTGTTGGCTCTCTGAACAAACAGGCTACAGTAAAGGATGTTGAGGAAATTTTCGCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAATAAGCAAAGTCGTGGATGTGGTTTTGTTAAATACTCGCATAGGGATATGGCACTGGCGGCTATAAATGCACTCAATGGGATCTATACAATGAGAGGTTGTGATCAACCACTGATTGTCCGGTTTGCTGATCCCAAGAGACCTCGTCAGGGAGATTCCAGGGGAACTGCATTTGGTGGTCCAGGATTTGTTCCTAGATTTGATGCACCAGGTGCAAGACTTCCGTCCACTATTGCTGATCCAATGGGTGATCGGATGCCTCCCCCTAATGCTTGGCGTCCAATGCATGCACCAAATATGGGGCCATCCTTTAATGCTGGTTTTCATGGCATGGGGCCTCCATTTCCAAGATCTGGTGACATGGCATTGCCTATAAATGCAGGTGGTCCTATGGTTGGCATGGGAGGCACAATAGATGATCGTTTTCAAGCTCAATCGCTGTCAGCAATGCCACAACAGAATTTCAATCAGCCTATGCCGCAAATCCCTCCAGTCAACCAACAACACACAGCACCATCGCAGAAACCAATTCAATCAACTCAGGAGTTGCCACCTTCCCTTCCATTGTACCCACAAGGTCCCTACACACAAACGCCACCACTTTCATCTCTTAGACCTCTTGGCCAGCCACAACTTCCCCTCTCTGCTGGTTCTGTACCTCCGCAGCCGGTACACGGCATGAGTGGACAATTTCCAACTTCACAACCCCAAACTCAGAAGAGTGCTTTGCCTGCTGCACTTCCTCAGGTGCCTCTTGATACCAGCTTGCAATCCAATACAGCTTTGACTACTCCAAATCAACAGCAAGGTCCCTCTGTGCAGCATCAGCCAGTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAAACTCAAAATTTACAAGCAAGCTTTCATTCATCACAGCAGGCCTTCTCCCAGCTTCAACAACAACTACAGATGATGCAACCAGCTAGTCAAGCGTCAATGTTGCAGCAAAATGCAGAAGCTACTAAAAAACAGTCTCAATGGGCTGGGACTGTACCACAGACAGCGGCCAGCACTCCTGCAGCTGCACCAGCTGCAGACATACATTCATCTGCATCTGCTACTTCTGCAGTATCAGTGGTAAGCCAGAATACGGCTCTTGCCAAATGTAATTGGACGGAGCATTTATCTCCAGAGGGCTTCAAGTATTACTACAATAGTGTCACTGGCGAAAGTCGGTGGGAGAAACCCGAGGAGTTGACGCTATTTGAACAGCAAAAGCAACAGCAAATGATATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAATCTTATCTGCCCAGCAACTTCCTCAAATCCAGCAGGTTCAGCCTCAAGGTAATCTCCAAGGACAGGTTCTCCACCAGCAACAAATGCAGCAATCTTCCTTGTCTTCTTCAGCATTCCAGGCATATGGTGTTGCAGGTCATCAAAATGTTCAGGAACTTGGTTATAAACAGATACAGCCATCTACTATTGCTACTGGCGATCCTGGACGCTACTCACAGGGTATTCATACTCCGCAAGAGTGGATTTGGAAAAATAAGCCTGCAGGAGTCTGA 2226 0.4892 MTYQNNSRRSPAPYRSGGRGFHSPSRRSPGRGGGFRPIGGGGDGFRPMRGDGYGDYGFNSYQAPPLSGHKRGFRGGSPDRFDGGNFAKLFVGSVPRTATEDDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKDVEEIFAKYGRVEDVYLMRDENKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGTAFGGPGFVPRFDAPGARLPSTIADPMGDRMPPPNAWRPMHAPNMGPSFNAGFHGMGPPFPRSGDMALPINAGGPMVGMGGTIDDRFQAQSLSAMPQQNFNQPMPQIPPVNQQHTAPSQKPIQSTQELPPSLPLYPQGPYTQTPPLSSLRPLGQPQLPLSAGSVPPQPVHGMSGQFPTSQPQTQKSALPAALPQVPLDTSLQSNTALTTPNQQQGPSVQHQPVQPLQQSPSQLAQMLSQQTQNLQASFHSSQQAFSQLQQQLQMMQPASQASMLQQNAEATKKQSQWAGTVPQTAASTPAAAPAADIHSSASATSAVSVVSQNTALAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLFEQQKQQQMISVQQSQTQSQPSILSAQQLPQIQQVQPQGNLQGQVLHQQQMQQSSLSSSAFQAYGVAGHQNVQELGYKQIQPSTIATGDPGRYSQGIHTPQEWIWKNKPAGV* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2570 741 MobiDBLite consensus disorder prediction 366 456 - -
Dod05g2570 741 MobiDBLite consensus disorder prediction 1 47 - -
Dod05g2570 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 168 IPR000504 GO:0003723
Dod05g2570 741 SUPERFAMILY WW domain 598 630 IPR036020 GO:0005515
Dod05g2570 741 ProSitePatterns WW/rsp5/WWP domain signature. 599 624 IPR001202 GO:0005515
Dod05g2570 741 MobiDBLite consensus disorder prediction 537 563 - -
Dod05g2570 741 MobiDBLite consensus disorder prediction 258 296 - -
Dod05g2570 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Dod05g2570 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 151 IPR000504 GO:0003723
Dod05g2570 741 Pfam WW domain 598 624 IPR001202 GO:0005515
Dod05g2570 741 Gene3D - 593 638 - -
Dod05g2570 741 Gene3D - 175 266 IPR012677 -
Dod05g2570 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 258 IPR000504 GO:0003723
Dod05g2570 741 SUPERFAMILY RNA-binding domain, RBD 78 172 IPR035979 GO:0003676
Dod05g2570 741 MobiDBLite consensus disorder prediction 366 399 - -
Dod05g2570 741 Gene3D - 84 174 IPR012677 -
Dod05g2570 741 CDD RRM2_FCA 179 258 IPR034645 -
Dod05g2570 741 SUPERFAMILY RNA-binding domain, RBD 178 277 IPR035979 GO:0003676
Dod05g2570 741 MobiDBLite consensus disorder prediction 474 501 - -
Dod05g2570 741 MobiDBLite consensus disorder prediction 440 456 - -
Dod05g2570 741 ProSiteProfiles WW/rsp5/WWP domain profile. 599 626 IPR001202 GO:0005515
Dod05g2570 741 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 58 697 - -
Dod05g2570 741 SMART rrm1_1 179 254 IPR000504 GO:0003723
Dod05g2570 741 SMART rrm1_1 88 164 IPR000504 GO:0003723
Dod05g2570 741 CDD WW 596 626 IPR001202 GO:0005515
Dod05g2570 741 SMART ww_5 594 626 IPR001202 GO:0005515
Dod05g2570 741 PANTHER TRANSFORMER-2-RELATED 58 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2570 Dod-Chr5 51965409 51975271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2570 86 263 Eukaryotic Initiation Factors Gene Family AT4G34110 26.042 4.66e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2570 - - gmx:100798390 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2570 05 51965409 51975271 Dod05g2570 05 51965409 51975271 ECH