Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2553 ATGGAAGAGAAAATTGGACCGACTGGTCTGATCAAACCAAACTTTGTTCTCACCCTTCTCAGAGAATTTGGTTTCTCAAATATCATCAGAAAACGCCCATTGCTCCTTTTGGCCAACCCAAAGGACATTCTTTTACTAAAGCTTAAATTTTTCCTTTCCATTGGGATTTCCAATGCTGACCTAACCCTTTTGACCGGGAGCTTGGAGAATCAAATGATACCCTCTTACCATTTCCTCAAAAGTGTGTTGCTTTCTGATAAAAAGGTCGTAGCTTCCTTGAGGCACACCTCATGGGTCTTTGTTGAGGACCACAACAAGAACCTCGTACCAAACCTTTATGTTCTCAAAGAATTGGGTGTGCCACAATCATGTAGGTGGGGTTGGTCAGATGACAATATCCTTTTGGCATTCAAGAAGCAAACACATTGCATGATACTGTCTGAGGATAAGATAATGAAGACAATGGATTACTTGGTGAATATGGTGGTGGGTAATTCGAGGAGGGAGGCGTTTGGGGGAGATGCATTTTCCAGTAAGAATCTGGTGGTGGGTGGAGGGTTGAGGGTGGGGGAGAATGAGAGGGAAAATATAATGAGCGAAAGCTTCAGTGTTGAGATTGAGAGGTGTTTGGTGCTGTTGCTCTCTCGCCCGATCGCCGCAGAGTGTTGCAGTGCGTGA 678 0.4454 MEEKIGPTGLIKPNFVLTLLREFGFSNIIRKRPLLLLANPKDILLLKLKFFLSIGISNADLTLLTGSLENQMIPSYHFLKSVLLSDKKVVASLRHTSWVFVEDHNKNLVPNLYVLKELGVPQSCRWGWSDDNILLAFKKQTHCMILSEDKIMKTMDYLVNMVVGNSRREAFGGDAFSSKNLVVGGGLRVGENERENIMSESFSVEIERCLVLLLSRPIAAECCSA* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2553 225 SMART mt_12 26 57 IPR003690 GO:0003690|GO:0006355
Dod05g2553 225 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Dod05g2553 225 SMART mt_12 58 85 IPR003690 GO:0003690|GO:0006355
Dod05g2553 225 SMART mt_12 134 164 IPR003690 GO:0003690|GO:0006355
Dod05g2553 225 Gene3D Transcription termination factor 3, mitochondrial 11 168 IPR038538 -
Dod05g2553 225 Pfam mTERF 17 124 IPR003690 GO:0003690|GO:0006355
Dod05g2553 225 PANTHER CGI-12 PROTEIN-RELATED 12 124 IPR003690 GO:0003690|GO:0006355
Dod05g2553 225 PANTHER CGI-12 PROTEIN-RELATED 125 162 IPR003690 GO:0003690|GO:0006355
Dod05g2553 225 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 125 162 - -
Dod05g2553 225 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 12 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2553 Dod-Chr5 51809448 51822348 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dod05g2553 mTERF 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2553 K15032 - twl:119983302 142.124