Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2545 ATGGCAATTGAGGAATCAATGGATGTAAAAGGGGGAGGGAGCAACACCAACACCAACACCACTGCCCTCCTAAGCGAGGATGAGATGGACCTCCGGAGAGGCCCTTGGACCGTCGATGAGGACTTCACCCTCATCAATTACATTGGCACTCATGGCGAGGGTCGCTGGAATTCCCTTGCTCGCTCTGCAGGTCTCAAACGAACTGGGAAGAGTTGTAGATTGAGGTGGCTAAACTATCTCCGTCCTGATGTTCGTCGTGGAAACATCACACTTGAAGAGCAACTTATGATTCTCGAGCTCCACACTCGCTGGGGAAATCGATGGTCTAAAATTGCACAATATCTTCCGGGAAGAACCGACAACGAGATCAAGAACTATTGGAGAACTCGTGTTCAAAAACATGCCAAACAACTCAAATGTGACGTGAACAGTAAGCAATTCAAGGACGCCATGCGCTACCTTTGGATGCCAAGGTTAGTTGAGCGCATTCAAGCAGCGGCAGCTGCTTCAGCCGCACCAGCAACCGTGACCGCAAGCTCTCCAACTTTATCTACCACCACCACCATCACCGCCGCCAATATTAATAACGCATATCCCTTCAACAACATCAACAACCTCAACAACAATTTTGAGGTTCATGATGGGAAAATGGGGTTGACTCAAGCGGTTATGAACAATGACTTTGTGAATTCACAGGTTACTACACAAAGTTATAATAACACCCCGGAGAATAGCAGCACAGCGGCATCATCAGACTCGTATGGGACTCAGGTCTCACCAATCTCGGATATGAATGATTATTACAGTGTCCAAGTCAGTAGTAATAACAACAACAACAATCCTAATCCTGCGGATAATTACTACCAACCCTCTCAGGTTAGCTACACGGATTGCATCACAAGCCCAACTAATGGGTCGTTATTACCTCAGGGAATGGATTTCCAAGGCATGATGATGGTGGAGCCAAACACCCCGTGGATGCAAAGTGGGGACACCTCGGACAATAATTTTTGGAATTTTGAGAACCTGATGTTTTTACAGCAGCAACTCATGAATGACAACATGTGA 1068 0.4672 MAIEESMDVKGGGSNTNTNTTALLSEDEMDLRRGPWTVDEDFTLINYIGTHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAASAAPATVTASSPTLSTTTTITAANINNAYPFNNINNLNNNFEVHDGKMGLTQAVMNNDFVNSQVTTQSYNNTPENSSTAASSDSYGTQVSPISDMNDYYSVQVSSNNNNNNPNPADNYYQPSQVSYTDCITSPTNGSLLPQGMDFQGMMMVEPNTPWMQSGDTSDNNFWNFENLMFLQQQLMNDNM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2545 355 Gene3D - 30 86 - -
Dod05g2545 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Dod05g2545 355 MobiDBLite consensus disorder prediction 1 20 - -
Dod05g2545 355 CDD SANT 90 129 IPR001005 -
Dod05g2545 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Dod05g2545 355 MobiDBLite consensus disorder prediction 235 257 - -
Dod05g2545 355 PANTHER MYB TRANSCRIPTION FACTOR 7 350 - -
Dod05g2545 355 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Dod05g2545 355 CDD SANT 35 80 IPR001005 -
Dod05g2545 355 SMART sant 85 133 IPR001005 -
Dod05g2545 355 SMART sant 32 82 IPR001005 -
Dod05g2545 355 Gene3D - 90 152 - -
Dod05g2545 355 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Dod05g2545 355 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 350 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod05g2545 355 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Dod05g2545 355 Pfam Myb-like DNA-binding domain 86 129 IPR001005 -
Dod05g2545 355 SUPERFAMILY Homeodomain-like 30 127 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2545 Dod-Chr5 51737816 51740224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2545 26 346 MYB Transcription Factor Family AT3G06490 53.687 4.70e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g2545 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2545 K09422 - gmx:100791349 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2545 05 51737816 51740224 Dod05g2545 05 51737816 51740224 ECH