Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2531 ATGGGGCCAGGAATGATGCATGGTCATCCACCTAATGCCCATCCTGCTGGCCAAAAGATGGGACATGGGGACAATTTGCATGCTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCAATGGGTCCGCAGCAGCCTAATATTGCTCAAATACCGGTTTCAACGAAGCAGCAGGGTATGAGAATGGGCAATCCCCCTTTTCAAAATGTAATGCCTAGTGCAAATGGAAGTGGTATCCCAGGGCATGCTATGCATAACATGTTCAATCCACCAATTGGAGGGCATCCACCTCTCTCAAGTAACTCCTTGACAGGGCCTTCTTATACTGGATCTTCCGATGTTACTGATCTCACACCTGCTGAAATTTACTGTCAGCAACACGAAGTCACAGCAACGGGTGACAATGTTCCACCTCCTTTCATGACATTCGATGCTACTGGATTTCCTCCGGAGATTTTAAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCGATTCAAGCTCAAACCTGGCCGGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACTGGCTCTGGAAAAACATTGGGCTACTTAATGCCTGCCTTCATTCTTCTTAGGCAGAGGCAGAATAATCCCTTGAATGGTCCCACTGTCTTGGTTTTGGCCCCGACACGTGAACTTGCTACTCAGATCCAAGATGAGGCCATCAAATTTGGCAGATCTTCACGTGTCTCCTGCACGTGCTTGTATGGTGGAGCACCCAAAGCCCTTCAGCTGAAAGAGTTAGATCGTGGAGCAGACATTGTTGTTGCCACACCTGGACGGCTCAATGACATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCGCTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGACATGGGTTTTGAACCTCAAATTCGAAAGATTGTAAATGAGATTCCACCACGCAGACAAACTCTCATGTATACAGCGACCTGGCCAAAAGAAGTAAGAAAAATTGCCAGTGATCTGCTTGTTAATCCTGTACAGGTTAACATTGGAAGTGTTGATGAGCTCGCTGCAAATAAAGCTATTACACAGTATGTTGAATTCGTCCCTCAAATGGAGAAACAGAGGCGTTTAGAGCAAATCCTCAGATCCCAAGAAAGGGGTTCTAAGGTTATAATATTTTGTTCCACAAAGAGATTATGTGATCAACTCACCCGAAGTATTGGTCGAAATTATGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAAGTGAGAGAGATTGGGTTTTAAATCAGTTCCGGACTGGGAAATCACCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATTAAGGATATAAGGGTGGTGATAAACTATGATTTCCCCACTGGAGTTGAGGACTATGTACATCGGATCGGAAGAACAGGAAGGGCAGGTGCTACTGGAGTGTCGTACACATTTTTCTCGGAGCAGGACTGGAAACATGCAAGTGATTTAATCAAAGTCTTGGAGGGTGCTAACCAGCATGTGCCTCCAGAGTTAAGACAGATGACCTCGCGTGGGCCACCAAACTTTGGAAAAGATCGAGGTGGGATGAGTCGTTTTGACTCTGGTGGTGGTGGTGGGCGTTGGGATAATGGTGGTCGTGGTGGCATGAGGGACAGTGGCTTTGGTGGCCGGGGCAGCATGAGGGATGGTGGCTTTGGTGGCCGGGGTGGCGTGAGGGAAGGTGGCTTTGGTGTCCGGGGTGGCATGAGGGACAGTGGATTTGGCAATGAAGGTGGCTTGAGGGATGGTGGCTTTGGTGTTCATGGTACTAGTGGGCAAGGTGGGAGAGGTGATTTATTTGGTGGTAGGGGCAATAGGGGTCGGGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGTTGGGGTAGAGGTGATCGCGGTCCAAATGATCGATTCAACATGGATGGACGAGGAAGAGGGCGTGGACGTGGGCGATTTGACAATAGAAGAGACGTTGCTTACAGGAATCGAGGCAGAAGTCACAGTCGTAGCCCAGAAAAAGTTCGAACTTGGGATTATAGTAGTAGAAGCCGCAGTGGAAGTAGAAGTAGAAGCAGGAGCTGGAGTCGAGGCCGTAGCCGCAGCAGAAGCCGAAGCCGTAGCTGGTCACGTGGTCGCAGTCGCAGCTATAGCCGTAGCATCAGCCCACGTCGGGGCCGTAGTCGCAGCTACAGTCGCAGTGGCAGCCGCAGTCCGCGTCGCAGTCACAGCTTTGATAGGGGTGATAGGACAGATCAACGATATTCTGATCAGAAGGATGGTAGGGAACCAGAAGTTGGAGCCTCCAATCAGAGAATGTCTCCTATGCCTCCCAGCACCCAAGGGCGTCAGAATTCAAATTTGGGAACTCATCATGTGGAGCAGGTACCAGTTGTTGGGAGTACTGAGCCGGAGGATCCCAATGCTCCTTCATAG 2475 0.4921 MGPGMMHGHPPNAHPAGQKMGHGDNLHARAGNEYYYNSSKEMPAMGPQQPNIAQIPVSTKQQGMRMGNPPFQNVMPSANGSGIPGHAMHNMFNPPIGGHPPLSSNSLTGPSYTGSSDVTDLTPAEIYCQQHEVTATGDNVPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRQNNPLNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLTRSIGRNYGAAAIHGDKSQSERDWVLNQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTSRGPPNFGKDRGGMSRFDSGGGGGRWDNGGRGGMRDSGFGGRGSMRDGGFGGRGGVREGGFGVRGGMRDSGFGNEGGLRDGGFGVHGTSGQGGRGDLFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRFDNRRDVAYRNRGRSHSRSPEKVRTWDYSSRSRSGSRSRSRSWSRGRSRSRSRSRSWSRGRSRSYSRSISPRRGRSRSYSRSGSRSPRRSHSFDRGDRTDQRYSDQKDGREPEVGASNQRMSPMPPSTQGRQNSNLGTHHVEQVPVVGSTEPEDPNAPS* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2531 824 MobiDBLite consensus disorder prediction 97 116 - -
Dod05g2531 824 Pfam DEAD/DEAH box helicase 169 339 IPR011545 GO:0003676|GO:0005524
Dod05g2531 824 Gene3D - 355 525 IPR027417 -
Dod05g2531 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 350 IPR014001 -
Dod05g2531 824 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 2 616 - -
Dod05g2531 824 SMART helicmild6 400 484 IPR001650 -
Dod05g2531 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 500 IPR027417 -
Dod05g2531 824 SMART ultradead3 164 367 IPR014001 -
Dod05g2531 824 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Dod05g2531 824 CDD SF2_C_DEAD 364 493 - -
Dod05g2531 824 MobiDBLite consensus disorder prediction 752 779 - -
Dod05g2531 824 MobiDBLite consensus disorder prediction 703 735 - -
Dod05g2531 824 MobiDBLite consensus disorder prediction 785 805 - -
Dod05g2531 824 Pfam Helicase conserved C-terminal domain 376 484 IPR001650 -
Dod05g2531 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 523 IPR001650 -
Dod05g2531 824 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 616 - -
Dod05g2531 824 MobiDBLite consensus disorder prediction 1 27 - -
Dod05g2531 824 MobiDBLite consensus disorder prediction 99 116 - -
Dod05g2531 824 MobiDBLite consensus disorder prediction 644 693 - -
Dod05g2531 824 Gene3D - 121 354 IPR027417 -
Dod05g2531 824 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 296 304 IPR000629 -
Dod05g2531 824 MobiDBLite consensus disorder prediction 518 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2531 Dod-Chr5 51520256 51525968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2531 133 522 Eukaryotic Initiation Factors Gene Family AT3G19760 34.430 2.14e-67 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2531 K12823 - gmx:100807830 1080.09