Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2515 ATGGAGGCTAGATTTGGGGGGAAGAATCAGTTATTGTGTGGAGCTGTGGTGCCAGAAATGAAGGCTGTTGGGAAGAGGAGCTTGGAGTGGGATTTGAATGATTGGAGATGGGATGGGGATCTCTTCACTGCTCACCAACTCAATTCAGTGCCATCAGATTGTAGGAGCCGCCAGTTTTTTCCGCCACATCCTGAGGTTCCTGCAAATGCTAATGATAATATTAATGCATCTGCCAATTTGTCTTGTTCTGTCAACCCTGTGGAAGGGAAGAGAGAATTGGAGAAAAGGAGAAGAGCTGTTATAGTAGGTGAAGAAGGTGAAGGTGAGGAGCCGAATGATGATGAAGGTGGTGGTGGTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTTTACCCTATCATGCTGGAAGAATTAGGGGATGAAAAAAGTGGAAAGAAGACGAAGTTAATTGGGAGTGCTAGTGCTAGTGCTAGTGCTGCTGCTACCACTTCTAACCGTGCTGTTTGTCAGGTACAAGATTGTAGGGCTGATCTTAGCAATGCAAAGGATTACCACCGTAGGCATAAGGTTTGTGATGTGCATTCTAAGGCTGCTAAGGCTCTTGTGGGAAATGTTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGAACTTCAAGAGTTTGATGAAGGGAAGAGGAGTTGTCGTAGGCGTCTGGCAGGCCACAATAGGAGGAGGAGGAAAACGCATCCTGATGCTAGCGGAGTTAATGGAGGCTTTCCGAATGGCGAAAGGGGCAGTAACTATCTGTTGATGAGTTTGATACGGATACTCTCCAGTATGCATTCAAATGGGTCAGATCATACAAGGAACCAGGATATTCTGTCTCATCTGCTGGGGAACCTGGCAAGTCTGGCGGGTACACTTAATGAAAGAAGTTTAGCCTCCTTAATGCAGGGATCACAAGCTTTGGTAAATGCTGGGACGCCTGATGCTGTGAATGATGTGCCAAATGGTCCTGAAGCCTCCAGGCCTCTTGATTCTTCCATCAAGGCAGATGATGGCCTCATCCATCTGGATCCTCCGAGGTCTATGGCACAATGTGAGGCAGTGCCTGCAAATGGCGCGGCAGAAAAGTTTATACCTTCAGGTGATGGGGGAGCAGGAAATTTAAAACCTGTGGGACCTCAGCCCTCAAATGTACTATCAAGGGACAGCATACCATCCCATTCAATTGCAGCAGAGACTCATGTTGGAAGGGATGGCTTTAATAACATTGACCTGAATAATGTATACGATGATGCACAGGATTGTGTTGAGAATCCTAATATGTCTCGTCCTCCTTTATTGTTGCAATGTGACACTCTCAAGTCAAGTCCGCCACAGACAAGTAGAAACTCAGATTCAACCTCCGCCCAATCACCGTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACTGATCGAATAGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTGTTCTCCGATCGCAGATCCTCAACTGGTTATCCCACAGTCCCACAGAGATCGAGAGCTATATAAGGCCAGGCTGTATTGTATTAACAATATATCTCCGCCTAGAAAAATCTGTGTGGGAGGAGCTCTCCTGTAATCTAGCATCCAGCTTGGGAAAGCTCCTTGCTTCAAATGATTCTTTTTGGAGAACAGGATGGGTGTATACAAGAGTGCAGCAATCTGTAGCTTTTATATATAATGGTAAGGTTGCCTTAGATGTTCCCTTGCATCTCAGAAGCCCACAGAATTGCAGGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAATGCAAGTGCTACATTTATTGTGAAAGGATTTAACCTTTTTGGGTCCAGCACAAGGTTGCTCTGTGCTCTTGAAGGGAAGTATCTGGTACATGATAGTTGTCATGATTTAATTGATGAAGCTAATGCAACTATTCAGCATCTCAGCTTCTCTTGTCATATACCAAATGTAACTGGGAGAGGGTTTATCGAGGTGGAAGATCATGGTCTTAGCAGCAATTCCTTTCCATTTATAGTTGCAGAACAAGAAGTTTGTTCGGAGATCTGCAAGCTGGAGAATGTGATTGAGGCAGCCGAGGCCACTGATGACATCCTAATGCAAAACAAACAAATAGAAGAAAAAACTCGAGCAGTGGATTTCTTACATGAAATGGGTTGGCTCTTTCATAGAAGTCGATTGAAAGATAGGCTTGGTCCCTTGGTACCTATTCAGGATCTCTTCCATTTCAATCGGTTCGTGTGGCTTGTTGACTTCTCCATGGACCATGATTGGTGTGCTGTGATGAAAAAACTCTTGGGCATTATATTTGAGGGTGGTGTTGATACAGGAGAGCATTCCTCCATCGAGCTTGCGTTGTTAGACATGAGTCTTCTACACAGAGCTGTAAAGAGAAATTGTCGGCCTATGGTGGAACTGCTGTTAAAATTTGTACCAGTTAAAAGTTCATCCAGTGCAGACAGTAAAGTGAAGCTGGTTGACAAGGCCCCTGATAGATTCTTATTTAGACCTGATAATGTTGGGCCTGCAGGGTTGACTCCCCTTCATGTTGCGGCAAGCATGAAAGGCTCGGAGAATGTCTTGGATGCGTTGACTGATGATCCAGGAATGGTAGGAATTGAAGCATGGAAAAGTGCAAGGGACAGCACAGGTTTGACACCTAACGACTATGCATCCCTCAGGGGCTATTACTCCTACATTCAACTTGTACAGAGGAACACCAGCAGAAGGCTTGAAAGACAACACGTGCTTGATATCTCTGGCACCCTTTTAGATATTAACACCAAGCAGAAACAACTAAATGTTCATAGAACATCTAAAGCTTCAAGTTTGCACACTGAGAAGATTGAAGCCACAGCAATGGCAAGTCAATGCGGGCTATGCCAGCGCAAGCTGGCTTATGCAGGCACAAGAACAGCACTGGTTTATAGGCCTGCAATGCTTTCATTGGTGGCCATTGCAGCTGTCTGTGTCTGTGCGGCTTTGCTCTTCAAGAGCTCACCTAAAGTTTATTATGTGTTCCAGCCTTTCAACTGGGAATCGTTGGAATATGGCTATATCTAA 3096 0.4493 MEARFGGKNQLLCGAVVPEMKAVGKRSLEWDLNDWRWDGDLFTAHQLNSVPSDCRSRQFFPPHPEVPANANDNINASANLSCSVNPVEGKRELEKRRRAVIVGEEGEGEEPNDDEGGGGGSLNLNLGGQVYPIMLEELGDEKSGKKTKLIGSASASASAAATTSNRAVCQVQDCRADLSNAKDYHRRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHELQEFDEGKRSCRRRLAGHNRRRRKTHPDASGVNGGFPNGERGSNYLLMSLIRILSSMHSNGSDHTRNQDILSHLLGNLASLAGTLNERSLASLMQGSQALVNAGTPDAVNDVPNGPEASRPLDSSIKADDGLIHLDPPRSMAQCEAVPANGAAEKFIPSGDGGAGNLKPVGPQPSNVLSRDSIPSHSIAAETHVGRDGFNNIDLNNVYDDAQDCVENPNMSRPPLLLQCDTLKSSPPQTSRNSDSTSAQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIVLTIYLRLEKSVWEELSCNLASSLGKLLASNDSFWRTGWVYTRVQQSVAFIYNGKVALDVPLHLRSPQNCRISCIKPLAVPANASATFIVKGFNLFGSSTRLLCALEGKYLVHDSCHDLIDEANATIQHLSFSCHIPNVTGRGFIEVEDHGLSSNSFPFIVAEQEVCSEICKLENVIEAAEATDDILMQNKQIEEKTRAVDFLHEMGWLFHRSRLKDRLGPLVPIQDLFHFNRFVWLVDFSMDHDWCAVMKKLLGIIFEGGVDTGEHSSIELALLDMSLLHRAVKRNCRPMVELLLKFVPVKSSSSADSKVKLVDKAPDRFLFRPDNVGPAGLTPLHVAASMKGSENVLDALTDDPGMVGIEAWKSARDSTGLTPNDYASLRGYYSYIQLVQRNTSRRLERQHVLDISGTLLDINTKQKQLNVHRTSKASSLHTEKIEATAMASQCGLCQRKLAYAGTRTALVYRPAMLSLVAIAAVCVCAALLFKSSPKVYYVFQPFNWESLEYGYI* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2515 1031 SUPERFAMILY SBT domain 167 247 IPR036893 GO:0003677|GO:0005634
Dod05g2515 1031 Pfam SBP domain 169 242 IPR004333 GO:0003677
Dod05g2515 1031 MobiDBLite consensus disorder prediction 376 399 - -
Dod05g2515 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1030 IPR044817 GO:0003677
Dod05g2515 1031 MobiDBLite consensus disorder prediction 449 478 - -
Dod05g2515 1031 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Dod05g2515 1031 MobiDBLite consensus disorder prediction 102 123 - -
Dod05g2515 1031 MobiDBLite consensus disorder prediction 443 478 - -
Dod05g2515 1031 MobiDBLite consensus disorder prediction 233 255 - -
Dod05g2515 1031 Gene3D - 786 959 IPR036770 -
Dod05g2515 1031 SUPERFAMILY Ankyrin repeat 799 915 IPR036770 -
Dod05g2515 1031 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1030 - -
Dod05g2515 1031 Gene3D - 159 230 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2515 Dod-Chr5 51376986 51384497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2515 1 1029 SBP-box Gene Family AT3G60030 46.604 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod05g2515 SBP 6.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2515 - - gsj:114419913 1450.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2515 05 51376986 51384497 Dod05g2515 05 51376986 51384497 ECH
Dod05g2515 05 51376986 51384497 Dod03g1662 03 23319032 23326567 PCT