Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2499 ATGATCTTATTGGTTATTGTTGCACGTGTTATTAGGAAAGTTGATCATTTGCACAAAGAGGACAGTTCCAACCAGGAGAGTAGATGGATGGCTCTGGTCAACGTAATCCGGCTTTCGAGCATTATAAAATATAGAATAGTCGTACTTTTGATACGGAAAAAAGGAGAGCGAGCTTGGAGAAGAAGGAAAGTGCCTTGTTTGGGTATCACGTGTGGAGATAGCATAAGAATCAAAAGAACAGATGGCGTAGGGACAAAGAAATGTGTAATTCAACTCCCATATGTAGGCAGTTTTTCATTCACCATAATTGGTAAAGGGCTTAGTAAGCAGAAGAAGCCTCCCTCCATGAAAATGGAAGGTGATACCAGTTTGAATGAAGATACTCAAGTTGTGTCGTTGAAATTCGTATACTTGGCTATAGGTTGCTTTTTTGCATCACTTCTGCGTAAGTACACCAGCTTCTCTGTGGGACAATTCATACAGTTAGTGGCAACTTTCGTTGGAGGTTTTGTCATAGCATTCATTAGGGGGTGGCTTCTAACTGTTGTCATGCTCTCTTGTATTCCACTGATTGCCTTGTCTGGTGCTGTAATGAGCATGGTTATTGCTAGAACATCATCCCTTGGACAAAAAGCATATTCTACAGCAGCAAGTGTAGTAGAGCAGACTATAGGTTCTATCCGAACGGTTGCATCATTCACCGGGGAGAAACAAGCAATAGCTAAGTATAATCACTCCTTAATCGAAGCTTACAAGACCGGGGTGCAAGAGGCATTGGGTTCTGGAATTGGTTTTGGTTCACTCTTTTTTGTTGTTATCTCCACTTATGGTTTGGCTGTGTGGTATGGTGGGAAGCTGATAATAGAGAAAGGATATACAGGAGGGGAGGTTGTGACTATAATCTTTGCTGTATTGACTGGCTCCATGTCTCTTGGGCAGGCATCACCAAGCCTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACGATTAAAAGGAGGCCAGAAATCGATGCTTATGATGCTAGCGGTCGAAAGCTTGATGACATCCGGGGAGACATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTACGAGGCCAGATGAGCTGATTTTTAATGGGTTCTCCCTTTCAATACCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGGAGTGGGAAATCCACGGTTGTTAGTTTGATAGAAAGATTTTATGATCCACAGTCTGGTGAAGTTCTCATTGATGGGATCAACCTCAAAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTTAGCCAGGAACCAGTTCTGTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGAAAAGATGGCGCGACCGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGCTAAATTTATAGACAAGCTTCCTCAGGGACTGGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATAGTACAGGAGGCACTGGACAGAATAATGATAAACCGAACAACTGTCATTGTGGCACACCGCCTAAGTACTATAAGGAATGCTGACACCATTGCTGTTATTCATCAAGGAAAAATAGTAGAAAGAGGTTCACACGCTGAGCTCACCACGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAGTTAAGGGGTCAGAACAGAATGGTGCAAATGACACAGATAAGCCAGAAAGTATTTTGCATTCTGGAAGACAATCAAGTCAACGATCTTCTTCTTTAAGATCTGTAAGCCAAAGATCATTCGGAGTTGGAAACAGTGGCCGACACTCATTGTCAGCAACATTTGGTTTGCCTACACCAGTTGGCCTCTTGGAACCAGCAGGTGCTGATCCAGAAGCTCCTCCTTCAGCAGTTGCACAAACACCACCAGAAGTGCCAGTCTATCGCCTGGCTTATTTAAACAAGCCTGAGATTCCTGTCTTACTGCTGGGGACAATATCTGCAGTGGCAAGTGGAACAATATTTCCCGCCTTCGGGCTCTTGCTTTCCAAAATGATTACTATTTTCTATGAGCCAGCTCATGAACTTCGTAAAGATTCAAGAACTTGGGCATTAGTATTTGTTGCACTTGGTGTAGCATCATTATTTATCTACCCATCTAGATTCTATCTTTTTGGTGTTGCTGGTGGCAAGTTGGTCAAAAGGATCCGGAAAATGTGTTTTGAGAAAGTAGTTCATATGGAAGTAAGTTGGTTTGATGAAGCTGACAATTCAAGTGGAGCAATTGGAGCAAGGCTTGCAACTGATGCAGCCTCCATTCGAGCTGTGGTTGGGGATGCACTTGGTTTGATGGTTGAAAATATTGCTACAGCAGTTGCTGGCTTGGTAATTGCTTTTGTAGCCTGCTGGCAACTTGCTCTTATAGTTTTAGCTTTGGCACCCCTATTAGCAATGAATGGATTTGTGCAATTCAAGTTCTTGAAAGGATTCAGCGCAGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATTAGGACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATATCAGAATAAATGTGAAGGAACAATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACTGGTTTTGGATTATCAGTCTTCTATCTGTTCTGTGTCTATGCGAGCAGTTTTTATGCCGGATCCCGGCTTGTTAAGGCTGGCAAAACATCAATGTCGGATGTTTTCCGTGTATTTTTCTGTCTTACAATGTCATCTATAGCATTATCTCAATCTAGCCTAATGGCCCCAGGTGCAAGTAAAGCAAAAAGTTCTGCTGCTTCTGTATTTGCTATTCTTGATCAGAAATCAAAAATAGACCCAAGTGATGAGTCCGGAATGACACTGCAAGATGTGAAGGGAGAGATTGAATTCCATCATGTTACTTTTAAGTACCCAAACAGGCCTAATGTACAAATATTCAGAGACCTTTCCTTGACCATTCATTCAGGAAAGACAGTTGCACTAGTGGGAGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTGCAAAGATTTTATGACCCTGATTCGGGCCAGATAACACTTGATGGAACAGAAATCCAAAAACTGCAACTTAAATGGTTTAGGCAACAGATGGGGCTTGTAAGCCAGGAGCCAGTGTTGTTCAATGACACAATCAGAGCCAACATAGCATATGGAAAGGGAGGTCATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTTGCAAATGCTCACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACAGTGGTAGGGGAGAGAGGAATTCAACTATCTGGGGGGCAGAAGCAGCGAGTGGCAATAGCAAGAGCCATAGTGAAGGGTCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTACAGGATGCACTTGACCGTATCATGGTGGACAGAACCACAATAGTGGTGGCACATAGGCTATCTACTATTAAGGGTGCTGGTTTAATTGCACTTGTTAAAAATGGTGTCATTGCTGAGAAAGGAAAGCATGAAGCATTGCTCAACAAGGGAGGCAACTATGCTTCATTAGTAGCACTCTACACAAGTGCTGCTACATCAACATGA 3795 0.4282 MILLVIVARVIRKVDHLHKEDSSNQESRWMALVNVIRLSSIIKYRIVVLLIRKKGERAWRRRKVPCLGITCGDSIRIKRTDGVGTKKCVIQLPYVGSFSFTIIGKGLSKQKKPPSMKMEGDTSLNEDTQVVSLKFVYLAIGCFFASLLRKYTSFSVGQFIQLVATFVGGFVIAFIRGWLLTVVMLSCIPLIALSGAVMSMVIARTSSLGQKAYSTAASVVEQTIGSIRTVASFTGEKQAIAKYNHSLIEAYKTGVQEALGSGIGFGSLFFVVISTYGLAVWYGGKLIIEKGYTGGEVVTIIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRRPEIDAYDASGRKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTTDPDGAYSQLIRLQEVKGSEQNGANDTDKPESILHSGRQSSQRSSSLRSVSQRSFGVGNSGRHSLSATFGLPTPVGLLEPAGADPEAPPSAVAQTPPEVPVYRLAYLNKPEIPVLLLGTISAVASGTIFPAFGLLLSKMITIFYEPAHELRKDSRTWALVFVALGVASLFIYPSRFYLFGVAGGKLVKRIRKMCFEKVVHMEVSWFDEADNSSGAIGARLATDAASIRAVVGDALGLMVENIATAVAGLVIAFVACWQLALIVLALAPLLAMNGFVQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQNKCEGTIQTGIRQGLVSGTGFGLSVFYLFCVYASSFYAGSRLVKAGKTSMSDVFRVFFCLTMSSIALSQSSLMAPGASKAKSSAASVFAILDQKSKIDPSDESGMTLQDVKGEIEFHHVTFKYPNRPNVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGHATEAEIIAAAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKGPKILLLDEATSALDAESEKVVQDALDRIMVDRTTIVVAHRLSTIKGAGLIALVKNGVIAEKGKHEALLNKGGNYASLVALYTSAATST* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2499 1264 Gene3D ABC transporter type 1, transmembrane domain 915 1008 IPR036640 GO:0005524|GO:0016021
Dod05g2499 1264 Pfam ABC transporter transmembrane region 146 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g2499 1264 Pfam ABC transporter transmembrane region 697 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g2499 1264 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524
Dod05g2499 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 145 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g2499 1264 Pfam ABC transporter 377 525 IPR003439 GO:0005524
Dod05g2499 1264 SUPERFAMILY ABC transporter transmembrane region 147 342 IPR036640 GO:0005524|GO:0016021
Dod05g2499 1264 Gene3D ABC transporter type 1, transmembrane domain 155 612 IPR036640 GO:0005524|GO:0016021
Dod05g2499 1264 SUPERFAMILY ABC transporter transmembrane region 685 1003 IPR036640 GO:0005524|GO:0016021
Dod05g2499 1264 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Dod05g2499 1264 Gene3D - 1009 1258 IPR027417 -
Dod05g2499 1264 Gene3D - 348 597 IPR027417 -
Dod05g2499 1264 SMART AAA_5 385 571 IPR003593 -
Dod05g2499 1264 SMART AAA_5 1046 1240 IPR003593 -
Dod05g2499 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Dod05g2499 1264 CDD ABC_6TM_Pgp_ABCB1_D1_like 124 319 - -
Dod05g2499 1264 MobiDBLite consensus disorder prediction 600 644 - -
Dod05g2499 1264 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1002 - -
Dod05g2499 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1256 IPR003439 GO:0005524
Dod05g2499 1264 CDD ABC_MTABC3_MDL1_MDL2 1019 1254 - -
Dod05g2499 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1008 1256 IPR027417 -
Dod05g2499 1264 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 156 1259 - -
Dod05g2499 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Dod05g2499 1264 PANTHER - 156 1259 - -
Dod05g2499 1264 Gene3D ABC transporter type 1, transmembrane domain 665 817 IPR036640 GO:0005524|GO:0016021
Dod05g2499 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g2499 1264 Pfam ABC transporter 1038 1187 IPR003439 GO:0005524
Dod05g2499 1264 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2499 Dod-Chr5 51218226 51238895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2499 160 596 Calmodulin-binding Proteins AT2G36910 43.182 1.77e-96 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2499 K05658 - gmx:100800293 1750.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2499 05 51218226 51238895 Dod05g2499 05 51218226 51238895 ECH