Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2493 ATGGAGCTAGATGACTGGGACTTCACTGCAGAGGAACTCGATTCTCTTGAACGCGACGCTTTCCAGAAGATTGCTCAACTTCGCAACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCCCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTCACCACTTCAATGCGTACCAGCAACATTCTGCAAAACCTTCTAACAACCGCTCGGAACCCTACCCATCAAACCCCGTTCCCGATTCTCGTTCTCAAAGGGTTGATACTTTCTCTCAAGGAGCTAGAGCATTGCCCACTTCATTGAAACCAAGGACAGAAAACGATGACCATTCAAAAGAACTGCCAAAGGTTTCAGTCAAATTTTTTCTTCATTCCACCGGGAATGTTGCAGCAAAGTTTCAATATGACCAGGTAGTAGTTGCTGCTTTTCGAAGAATCCCTAGAGCTTCTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCGTTATCTTCTTTGTCAGAAGCAGAGAAGGTTCTTGGAGAAATATCTGGTTACAATGTTCAGGTGGAGAACTTAGATTCCTTAGTGCACCGGGCGATTACTGCTGCATTTGTTGTTCCAGATCTTCAAGATCAATACAACAAGATTCCTAGTTACATTGAATCAAAGCTTTTGCCATTTCAGCGAGAAGGTATTAGGTACGTAGTAGCCTGTTCCCTTTTTTCCCAGTATATCTTTCTTGTACAGGCCATTGCTGTAGCTTCATGTGTTCAGGACTCATGGCCTGTTCTTGTACTTGCACCATCTTCACTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATCTTCCTTCATCAGATATACTTATCGTCTTATCTCAAAGTGGTGGATCAAACAGAGGAGGTTTTAATATAGTATCCTCAAGTTCCAAAAGTGGCATTCATCTGGAAGGACTGTTCAACATTATCTCATATGATTTGGTGCCAAAGCTGCAGAATATGCTTATGGCATCAGACTTTAAGGTTGTGATCGCAGATGAATCACACTTTCTGAAAAATGCTCAGGCAAAGAGAACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTAAATATGCAATATTGCTTAGTGGAACACCTGCGTTATCCCGACCAATAGAACTATTCAAACAGCTTGAAGCTTTGTATCCTGATGTATATAAGAACGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAATTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATACGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATAAATGCTTTATTCCGTGAGTTGGAGATGGTAAAAGCTAAAATTGAGGCAGCTAAATCAAAAGAGGAGGCTGAATCACTTAAGTTTACTCAAAAGAATCTTATTAACAAGATATATAATGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGCTGCAAGTTTCTTATATTTGCGCACCATCAGTCGATGATAGATTCAATACATGAGTTTCTACTTAAGAAAAAAGTGGGCTGCATCCGGATTGATGGAACTACACCTGCTGCATCAAGGCAACAATTGGTTACAGAGTTTCAGGAAAAGGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGTACAGTCATCTTTGCAGAGTTATCCTGGACTCCAGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGACAGGTGTCTTCAGTCAATATATACTACTTGCTGGCAAATGACACAGTTGATGACATCATATGGGATGTGGTGCAAAGCAAGCTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGAGGTCTCAACTAACCAGCCAGGTCATAGTCCTTCAAAGCAGAAAACTCTTAACCCCAGTCCTTCAAAGCAGAAAACCCTTGATCAGTTTGTTAGAAGATGTGATCATGCGGATGGGTTGCAAGATCAGCCCAACCCAAAACGTCTCCGGTACTGA 2145 0.4145 MELDDWDFTAEELDSLERDAFQKIAQLRNSSSSSSSSSSAPSSSSSSSSSSSSVHHFNAYQQHSAKPSNNRSEPYPSNPVPDSRSQRVDTFSQGARALPTSLKPRTENDDHSKELPKVSVKFFLHSTGNVAAKFQYDQVVVAAFRRIPRASWNAKERLWMFPLSSLSEAEKVLGEISGYNVQVENLDSLVHRAITAAFVVPDLQDQYNKIPSYIESKLLPFQREGIRYVVACSLFSQYIFLVQAIAVASCVQDSWPVLVLAPSSLRLQWASMIQQWLNLPSSDILIVLSQSGGSNRGGFNIVSSSSKSGIHLEGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGLYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIEAAKSKEEAESLKFTQKNLINKIYNDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQSMIDSIHEFLLKKKVGCIRIDGTTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSTNQPGHSPSKQKTLNPSPSKQKTLDQFVRRCDHADGLQDQPNPKRLRY* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2493 714 Gene3D - 194 441 IPR038718 -
Dod05g2493 714 Coils Coil 649 669 - -
Dod05g2493 714 MobiDBLite consensus disorder prediction 664 688 - -
Dod05g2493 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 666 IPR027417 -
Dod05g2493 714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 393 IPR014001 -
Dod05g2493 714 CDD DEXHc_HARP_SMARCAL1 218 435 - -
Dod05g2493 714 MobiDBLite consensus disorder prediction 26 88 - -
Dod05g2493 714 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 664 IPR001650 -
Dod05g2493 714 SMART ultradead3 214 401 IPR014001 -
Dod05g2493 714 Coils Coil 464 488 - -
Dod05g2493 714 CDD SF2_C_SNF 508 632 - -
Dod05g2493 714 SMART helicmild6 538 621 IPR001650 -
Dod05g2493 714 ProSiteProfiles HARP domain profile. 111 187 IPR010003 -
Dod05g2493 714 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 697 - -
Dod05g2493 714 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 697 IPR030101 GO:0006281|GO:0031297|GO:0036310
Dod05g2493 714 Pfam SNF2-related domain 252 491 IPR000330 GO:0005524|GO:0140658
Dod05g2493 714 Gene3D - 473 704 IPR027417 -
Dod05g2493 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 446 IPR027417 -
Dod05g2493 714 Pfam Helicase conserved C-terminal domain 521 621 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2493 Dod-Chr5 51194488 51202578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2493 402 648 RAD5 or RAD16-like Gene Family AT1G61140 25.098 1.86e-18 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod05g2493 SNF2_N 1.3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2493 K14440 - gmx:100797654 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2493 05 51194488 51202578 Dod05g2493 05 51194488 51202578 ECH