Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2488 ATGGAAGGCAAAATTGCATCAAAAGAATTGCCTCAAGTTCAAGAAAGGCCGTATGATAATAATACTAAAGCATTGAACGGGACTACGGATTCCTCCATTAGTAATACTCTAGGATCTACTTTTCTCAGTTTGAGCTTGAATAACTCAGAACAGCCTCTCCAAAATAAAGAGCAGCCCCTGACCCAGTTGGGATTGCTGCAAACCAAGCTGGAGGAAGTGAAGAAGGAGAATCAGAATCTAAGATTTATGCTAAATCAGATTACTGAACACTACGCTGCTCTTCAGAATCAGTTACTGTTGGCGATGCAGCAACAGCAACTATCTGCATCTCCTAGAAATAACCGTTACCTGAAGAGGGACAATAGACGAGGTGGCATGGAGAGACCAGTGTTACTCACCCGGCAGTTCTTAAATAGTGGTGACCATTCACCTGATGGCAGCACAAAAGAAAGATTTGCTTCTTCGGAAAACATTCAGATGAATATAGGCAGAAACCTTACTGGTGCTTACAATGTTGAAGGTGAAATCAGTAACCAAACAACATCACAAGAAGCAAAAAACATGGAAGGTCAAGCACCTGAAGCTTCTTGCAGGAAAGCTAGAGTGTCCATAAGGGCACGATCAGATTTTTCGCTAGTGGGTGATGGGTGTCAATGGAGAAAGTATGGACAAAAGACTTCAAAGGGCAACCCTTGTCCCAGAGCCTACTACCGTTGCAGCATGGGAACAGCATGTCCAGTTCGTAAGCAGGTTCAAAGGTGTTCTGCAGATGAGACAGTTCTCATCACATCCTATGAGGGGAGACATAATCATTCACTCCCGCCAGCAGCAAGAACCATTGCCAGCACAACATCAGCAGCACTGAACATGTTCCTTTCTGGCTCCATCACTAGTTCTATGTCAAATTCGGGCCTTTTCTCTCCATTATCCACTTCTTCTGTCTACACTGCTGGCTTGGCTACCTTCTCCACATCTGCATCATGTCCCACCATAACACTGGACTTAACCCAGCCCTCTAATAATAACTGCATGAAATTCCAAAGGGCCATTTCATCAAACCATAGAGAACCATTTCCTTTGTCAATAGATGGTAACGCTCAACAATCTGGGAGGTTTTACTTGTCTTCCAAGCTTCCAGCAGGAATGATACCCTCAGAGAGAAACCTTCCCTTGGTGGATGTTGTCAGTGCAGCTATAACTAAGGATCCTTCTGTTATGGCATCATTAATTGCAGCCGTTTCCTCACTCAATGAAAACACTCAGAACATCAATCAATAA 1278 0.4374 MEGKIASKELPQVQERPYDNNTKALNGTTDSSISNTLGSTFLSLSLNNSEQPLQNKEQPLTQLGLLQTKLEEVKKENQNLRFMLNQITEHYAALQNQLLLAMQQQQLSASPRNNRYLKRDNRRGGMERPVLLTRQFLNSGDHSPDGSTKERFASSENIQMNIGRNLTGAYNVEGEISNQTTSQEAKNMEGQAPEASCRKARVSIRARSDFSLVGDGCQWRKYGQKTSKGNPCPRAYYRCSMGTACPVRKQVQRCSADETVLITSYEGRHNHSLPPAARTIASTTSAALNMFLSGSITSSMSNSGLFSPLSTSSVYTAGLATFSTSASCPTITLDLTQPSNNNCMKFQRAISSNHREPFPLSIDGNAQQSGRFYLSSKLPAGMIPSERNLPLVDVVSAAITKDPSVMASLIAAVSSLNENTQNINQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2488 425 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 424 IPR044810 GO:0003700
Dod05g2488 425 Coils Coil 66 104 - -
Dod05g2488 425 ProSiteProfiles WRKY domain profile. 208 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g2488 425 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 2 424 - -
Dod05g2488 425 Pfam WRKY DNA -binding domain 215 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g2488 425 SMART WRKY_cls 213 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g2488 425 Gene3D WRKY domain 197 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod05g2488 425 MobiDBLite consensus disorder prediction 1 32 - -
Dod05g2488 425 MobiDBLite consensus disorder prediction 14 32 - -
Dod05g2488 425 SUPERFAMILY WRKY DNA-binding domain 207 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2488 Dod-Chr5 51167848 51171072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2488 66 337 WRKY Transcription Factor Family AT4G04450 43.548 1.51e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dod05g2488 WRKY 7.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2488 - - gmx:100797109 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2488 05 51167848 51171072 Dod02g1594 02 19598398 19604380 PCT
Dod03g1649 03 23018763 23031962 Dod05g2488 05 51167848 51171072 PCT