Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2482 ATGGGAACATTGGAGGAGCAAATTGATGCTCATCAAACCCAGTCATCATCATCTTCATCTTCTTCCATTGATAGCACCAACCACCCTTCTTCTAGGATTACACCACTAACCTCTTCCTCTTATTCATCACTTTGCCTCTCAAGTTTATGCAGAAGAAACACCAGCAACACCAACAACAGAACGGACTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCCTCCCAGTCTGAATTGCCAACCAACTCAACAAGGGAGCAAGGCTTGGATTGGCCACCAATTAAGTCCATATTGAGGTGCACCCTTGTTGAGAAACAAAACCAGCAAAGCCAAAGACCCTCTTTATTTGTCAAGGTCTACATGGAAGGCATCCCCATAGGCAGAAAATTAAATCTGCTGGCACACCATAGTTATGATGGACTTGTAAAAGCTCTTGGCCGCATGTTCAGGACCACCATTCTCTGCCCTAGCTCTCAGCCACTCAATTCTGGCAATTTTCATGTTCTAACTTATGAGGACCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCTTGGGAGATGTTCTTGACCAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 621 0.4573 MGTLEEQIDAHQTQSSSSSSSSIDSTNHPSSRITPLTSSSYSSLCLSSLCRRNTSNTNNRTDLSTDLRLGLSISPSSQSELPTNSTREQGLDWPPIKSILRCTLVEKQNQQSQRPSLFVKVYMEGIPIGRKLNLLAHHSYDGLVKALGRMFRTTILCPSSQPLNSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC* 207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2482 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 206 IPR003311 GO:0005634|GO:0006355
Dod05g2482 206 MobiDBLite consensus disorder prediction 1 38 - -
Dod05g2482 206 Gene3D - 110 206 - -
Dod05g2482 206 SUPERFAMILY CAD & PB1 domains 110 200 - -
Dod05g2482 206 Pfam AUX/IAA family 17 202 IPR033389 -
Dod05g2482 206 ProSiteProfiles PB1 domain profile. 116 205 IPR000270 GO:0005515
Dod05g2482 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 18 206 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod05g2482 Dod-Chr5 51120777 51122585 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2482 106 206 B3 DNA Binding Superfamily AT2G46530 34.653 1.85e-11 60.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod05g2482 AUX_IAA 3.2e-36 CL0072
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2482 05 51120777 51122585 Dod05g2482 05 51120777 51122585 ECH