Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2468 ATGGCAGCAACAGAACCCCCTCCTTTCCAAGAAGCAGCGCGATGTGTTGTCTGCAGTTGCAGTTTCAACACCTTCAGGAGACGCCATCACTGTCGATCTTGTGGGAGAACTTTGTGCAGTGAACATTCATCAAATCAAATGGCCTTGCCTCAATTTGGCATTTACTCAAATGTCCGAGTATGTGCTGATTGTTTCAACAATTCGCAATCTGGGAGGGCTTCTTCAGATGGAGTAACCACTGTAACAGATACAATTTCTAAATTAGATATTGCTGCAAATTCTGCTTCAAAAGCCATGCCAACTGCAGAGAATGCCCTTGTGAAATCCGCCCCAGTTATTACAGCTCAATCAAATCCTAAACCTAAGAAGACAGATACTGTTCCAAAAAATAGAAGCTCTAGTTCATCTAGCAAGTTTAGTTCTGCGTTTAACCTTGGTCATACAAGCAATGGTCCATCAGACAGAAGCCAGACTGATTATGAAGCTACTGGAGAGGGTTTAAGAGAAGCTATAAAAAATGGTGACGTTGCTGCTGTCAAGAAACTTCTCGATCAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGACTATCTTTACTGCATTTGGCTGCAGTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGCCTGGAGTACAAAAATGCACAAGGAGAAACGCCTTTAGATTGTGCCCCAGCTACCTTGCAATACAAAATGCGAAAGAAGATTGAAGACAGTGGAAAGATCGAGCAAAGCATTTGA 777 0.4273 MAATEPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCSEHSSNQMALPQFGIYSNVRVCADCFNNSQSGRASSDGVTTVTDTISKLDIAANSASKAMPTAENALVKSAPVITAQSNPKPKKTDTVPKNRSSSSSSKFSSAFNLGHTSNGPSDRSQTDYEATGEGLREAIKNGDVAAVKKLLDQGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEDSGKIEQSI* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2468 258 SMART ANK_2a 162 191 IPR002110 GO:0005515
Dod05g2468 258 SMART ANK_2a 195 224 IPR002110 GO:0005515
Dod05g2468 258 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 98 251 - -
Dod05g2468 258 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 105 - -
Dod05g2468 258 SUPERFAMILY Ankyrin repeat 167 238 IPR036770 -
Dod05g2468 258 SMART fyve_4 1 70 IPR000306 GO:0046872
Dod05g2468 258 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Dod05g2468 258 Pfam Ankyrin repeats (3 copies) 169 236 IPR002110 GO:0005515
Dod05g2468 258 MobiDBLite consensus disorder prediction 110 160 - -
Dod05g2468 258 SUPERFAMILY FYVE/PHD zinc finger 9 72 IPR011011 -
Dod05g2468 258 ProSiteProfiles Ankyrin repeat region circular profile. 195 226 - -
Dod05g2468 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 73 IPR013083 -
Dod05g2468 258 ProSiteProfiles Ankyrin repeat profile. 167 194 IPR002110 GO:0005515
Dod05g2468 258 Gene3D - 144 243 IPR036770 -
Dod05g2468 258 Pfam FYVE zinc finger 10 69 IPR000306 GO:0046872
Dod05g2468 258 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Dod05g2468 258 MobiDBLite consensus disorder prediction 109 162 - -
Dod05g2468 258 CDD FYVE_scVPS27p_like 8 65 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2468 173 233 MAP Kinase Kinase Kinase AT4G18950 40.984 1.11e-09 56.2