Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2461 ATGGCTTCTTTATCGCCTGAACTCTTCCTCCTTCTCTTAACTATCTCCTTCTCACATTCTAGTGCTGCCATTGTCAACCCCTCCAATAATGCTTCCACAACAACGCTCCATGCAAACCTTTCTTCATTAAAATCCTTCTGCAGAACTACCCCCTACCCTGAAGTATGCTTCAATTCACTGAAGTTATCCATCTCAATAAACATAAATCCAAACATCATAAACAACCTCCTTCAGTCCCTCCAAGTAGCAATATCCGAAACCACAAAGCTATCTGATCTATTCAACAATGCTGGACAGTCAAACATCATAGAGAACAAAAGAGGAGCAGTCCAAGACTGCAAGGAACTCCACCAAATCACCTTATCCTCTCTGAAAAGATCATTATCTGGGGTTCGCTCCCAGAACACAAGGAAGCTAGTTGATGCAAGAGCTTTCCTCAGTGCATCACTGACCAACAAGGACACATGCTTAGAAAGCCTTGACTCAGCTTCTGGCACCCTTAAGCCAGTTCTAGTTGATTCTGTGATCAACACTTACAAGCATGTCAGCAACTCTCTTTCAATGCTCCCCAAGCCAGAGATGAAGGCCCAAAAAGGAAACAAGAACCGGCGTTTGATGAGTGTTCCAAAGTGGTTTTCAAGCTTAGGTGGTGAAGGCTATGACCCTAATGAAGTGCTTGTTGTGGCAGCAGATGGAAGTGGGAACTTTAGCACCATCAGTGAAGCTATTGACTTTGCTCCGAACAACAGCCATGGTAGGACAGTGATCTATGTCAAAGAAGGGGTATACGAGGAGAATGTCGAAATCCCAAGTCATAAGACCAACATACTTCTGCTTGGAGGTGGAAGTGATGTCACTGTCATCACTGGCAAGAGAAGTGTCGATGATGGCTGGACCACCTTCAGATCCGCCACTTTAGCGGTGTCTGGTGAGGGCTTTTTGGCTCGTGACATAGCCTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCACTAAGAGTAAATGCAGACTTAACTGCTTTCTACAGGTGTACAATTTATGGCTACCAAGACACTCTATACGTTCACTCCTTTAGACAGTTCTATAGAGAGTGTGACATTTATGGGACCATAGATTTTATATTTGGGAATGCAGCTGTGGTTTTACAGGCATGTAACATTGTGTCCAGAATGCCACTGCCTGGCCAATTCACTGTCATAACTGCCAGTCCAGAGATAGCCCTGATGAGGACACTGGGATCTCAATCCAAAACTGCTCAATTATAG 1272 0.4465 MASLSPELFLLLLTISFSHSSAAIVNPSNNASTTTLHANLSSLKSFCRTTPYPEVCFNSLKLSISININPNIINNLLQSLQVAISETTKLSDLFNNAGQSNIIENKRGAVQDCKELHQITLSSLKRSLSGVRSQNTRKLVDARAFLSASLTNKDTCLESLDSASGTLKPVLVDSVINTYKHVSNSLSMLPKPEMKAQKGNKNRRLMSVPKWFSSLGGEGYDPNEVLVVAADGSGNFSTISEAIDFAPNNSHGRTVIYVKEGVYEENVEIPSHKTNILLLGGGSDVTVITGKRSVDDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADLTAFYRCTIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQACNIVSRMPLPGQFTVITASPEIALMRTLGSQSKTAQL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2461 423 Pfam Plant invertase/pectin methylesterase inhibitor 42 188 IPR006501 GO:0004857
Dod05g2461 423 Gene3D - 221 413 IPR012334 -
Dod05g2461 423 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 189 IPR035513 -
Dod05g2461 423 PANTHER PECTINESTERASE 8 405 - -
Dod05g2461 423 SUPERFAMILY Pectin lyase-like 222 406 IPR011050 -
Dod05g2461 423 Pfam Pectinesterase 226 405 IPR000070 GO:0030599|GO:0042545
Dod05g2461 423 ProSitePatterns Pectinesterase signature 2. 369 378 IPR033131 -
Dod05g2461 423 PANTHER PECTINESTERASE 8 405 - -
Dod05g2461 423 SMART PMEI_2 38 188 IPR006501 GO:0004857
Dod05g2461 423 CDD PMEI-like_3 45 188 - -
Dod05g2461 423 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 191 IPR035513 -
Dod05g2461 423 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 189 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2461 Dod-Chr5 50943371 50946013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2461 17 404 Carbohydrate Esterase AT2G26440 64.286 1.14e-180 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2461 - - gmx:100776969 590.882