Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2460 ATGGCATTCCAAGACTTTGATGTCATCTCAGAACGGCGAAGAAATGAGAAGAAGCAGAAGGTGAAGAAGAGGGTTCTCATTTGTGTTGTTTCTACCATTGTCCTTGCTGGTCTTGTAGCTTCTGCATTCTTCATTGTGACCGGTGTTATTAACAAGAACAAGAAATCATCACCACCCTCATCTCCTAGCAACAACAACCCGCCACAAATCCAAACCTCACAGAAAGTTGTGAAGCTAGTGTGCAGCAATGCAAATTACAAGGACAAATGTGAGGGACCCCTCCAAGATGCAGTGAAACAAGACCCTAATCTCAAAAACCCCAAGGACTTCCTCAATATCTATGTCAAGTATGCTCTGGATGAGGTTGACAAGGCATTCAACCAGACCTCCTCACTCAAATTTGAGTCTGAGGCTGAGAAAGGAGCATTTGAGGATTGCAAGCAGCTCTTTCAGGATGCCAAGGAGGACTTGGAAACCTCAATCAATGAACTCACCAGAATCTCTGACTTCAAGAAGATCTCAACAAGGACTCCTGACTTCAACAGCTGGCTCAGTGCTGTCATCTCTTATCAGCAGACATGTGTTGATGGTTTCCCTGAGGGGAAGCTGAAGACTGATCTTCAGAACCTGTTCACGGATTCAAGGGAGATTGTTAGCAACTCACTTGCTATTGTGTCTCAGATGGGGTCAGTGCTTTCTACATTCCAGTCTCTTGCTGGGGGTCGTTTGCTGGCAGAGAAATCAGAAGAAGAAGAAGAAGAATCCCCTCTACTTGCTTCTTTGGACAAAGTTGATGGCCTTCCTACTTGGATTGACCCCAAGGACAGGAGGATCCTCAAGGCTGCAGATAACAAGCCTACACCTAATGTCACTGTGGCCACCGATGGCAGTGGAGACTTCAAAACCATCTCTGAGGCTTTGGAAAAAGTCCCTGAAAAATATGATGGACGGTATGTGATTTTTGTTAAAGAAGGAGTTTACGATGAGACAGTGACAATAACAAAGAGAATGCAAAACTTAACCCTCTATGGTGAAGGATCACAAAAGAGCATCATCACCGGCAACAAAAACTTCAGGGATGGAGTCAGGACTTTCCAAACTGCTCCCTTTGTGGTGCTAGGAGATGGATTCATTGGCAAAGCAATGGGATTCAGGAACACTGCTGGGCCAGAAGGACACCAAGCTGTGGCTGCCAGAGTTCAAGCAGACCGATCAGTGTTTGTGAACTGCCGCTTTGAGGGTTACCAAGACACACTGTATGTCCAAGCCCACAGGCAATTCTACCGCAGCTGCATCGTCTCAGGCACCATTGACTTCATCTTTGGTGATGCTGCTGCTGTGTTCCAGAACTGCATCATGATGGTTAGGAAGCCATTGGACAACCAGCAGAACATGGTCACAGCACAAGGCAGAATGGACCCAAAACAGACCACAGGGATTGTCCTCCAGAAATGTGTCATCAAGGCTGATGAGTCACTTGAACCTGTGAAGGACAATTTCAGGAGCTACCTTGGTAGGCCATGGAAGGAGTATTCAAGGACAGTTGTTATGGAAAGTGAGATTGGTGACTTGATTCACCCTGATGGATGGACTCCTTGGGCAGGTGACTTTGCACTCAAGACACTTTACTATGCTGAGTACAACAACAATGGACCTGGTTCCAAGACTGGTGCTAGGGTCAAGTGGCCTGGCTTCAAGGTCATCAACAAGCAAGAGGCTAGCAGGTTCACTGTGGCGAACTTCTTGAAGGGCACTTGGGTCCAGGGAACTGGGGTGCCATCTGTTCAAGGCTTTTACAGTTAA 1803 0.4676 MAFQDFDVISERRRNEKKQKVKKRVLICVVSTIVLAGLVASAFFIVTGVINKNKKSSPPSSPSNNNPPQIQTSQKVVKLVCSNANYKDKCEGPLQDAVKQDPNLKNPKDFLNIYVKYALDEVDKAFNQTSSLKFESEAEKGAFEDCKQLFQDAKEDLETSINELTRISDFKKISTRTPDFNSWLSAVISYQQTCVDGFPEGKLKTDLQNLFTDSREIVSNSLAIVSQMGSVLSTFQSLAGGRLLAEKSEEEEEESPLLASLDKVDGLPTWIDPKDRRILKAADNKPTPNVTVATDGSGDFKTISEALEKVPEKYDGRYVIFVKEGVYDETVTITKRMQNLTLYGEGSQKSIITGNKNFRDGVRTFQTAPFVVLGDGFIGKAMGFRNTAGPEGHQAVAARVQADRSVFVNCRFEGYQDTLYVQAHRQFYRSCIVSGTIDFIFGDAAAVFQNCIMMVRKPLDNQQNMVTAQGRMDPKQTTGIVLQKCVIKADESLEPVKDNFRSYLGRPWKEYSRTVVMESEIGDLIHPDGWTPWAGDFALKTLYYAEYNNNGPGSKTGARVKWPGFKVINKQEASRFTVANFLKGTWVQGTGVPSVQGFYS* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2460 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 70 228 IPR006501 GO:0004857
Dod05g2460 600 MobiDBLite consensus disorder prediction 53 72 - -
Dod05g2460 600 Pfam Plant invertase/pectin methylesterase inhibitor 76 224 IPR006501 GO:0004857
Dod05g2460 600 SUPERFAMILY Pectin lyase-like 287 596 IPR011050 -
Dod05g2460 600 SMART PMEI_2 72 224 IPR006501 GO:0004857
Dod05g2460 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 228 IPR035513 -
Dod05g2460 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Dod05g2460 600 CDD PMEI-like_3 79 230 - -
Dod05g2460 600 PANTHER PECTINESTERASE 14 598 - -
Dod05g2460 600 Gene3D - 283 598 IPR012334 -
Dod05g2460 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 229 IPR035513 -
Dod05g2460 600 Pfam Pectinesterase 289 584 IPR000070 GO:0030599|GO:0042545
Dod05g2460 600 PANTHER PECTINESTERASE 14 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2460 Dod-Chr5 50939609 50942330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2460 1 599 Carbohydrate Esterase AT2G26450 47.244 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2460 - - gmx:100784679 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2460 05 50939609 50942330 Dod03g1634 03 22761303 22763812 PCT