Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2446 ATGGTTCCGAAGAAACTCCTTCACCTTGAAACTCCAGCAACGGTTCTTGCCGTTCTCACACTCGCTCTGCACTTCTTCTCGCATCCGAATAATGCAATAAGTAACCCTCGCGGAACTGTGCGTGGAAGCTTCTTCTTGGACCAACAGCTGGCGGCTGCGGAGGACGGCCCCGTTAGGATTGTGAGGGTTCGAAGAGATGGCGGAGGGGACTTCAGGACGGTGACGGAGGCCGTTAACAGTATTCCGTCGGGGAACAAGAGGCGCGTGGTGGTGTGGATCGGCATTGGGGAGTATAGGGAGAAGGTAACGGTGGATAGGTCGAAGCCCTTTGTCACGTTTTATGGAGAGAGGAATGGTGACGACGCTGAAGAAATGCCAACCATAACGTACAACGGCACGGCGTTGAAGTACGGCACGGTGGATAGCGCCACTGTCGCTGTTGATTCTGACTACTTCGTTGCTGTTAATGTGCGCTTCATGAACTCGTCTCCAATGCCAGATGAGAACAGTGTAGGAGCACAAGCTGTAGCGATGAGGATATCAGGGGACAAGGCTGCATTCTACAACTGCAAGTTCATAGGGTTTCAGGACACCTTGTGCGATGACAAAGGCAGGCATTTTTTCAACGACTGCTACATCCAAGGCACCTACGATTTCATCTTTGGAAATGGGAAATCCCTCTACTTGAGAAGCACCATAAAATCGGTTGCGAAGGGTTTGAGTGTTATCACTGCACAAGGTAGGGAAAGCATGGCAGAAGACACTGGATTCACTTTTGTGCACTGCAACATAACGGGGAGTGGTAAAAGGAACACTTACCTAGGACGTGATTGGAAGGGGAGCCCGAGGGTGGTGTTTGCCTACACCTACATGGGCTCCCTCATTAGTACCCGAGGATGGTTCCACCGCCAACTCTCTCAGCATGATGATCAATCCCAACGCAATCAGACGATATTCTATGGAGAATACAGGTGCATGGGACCAGGAGCTGCTTCCTCTGGCCGCGTAAAATTTGACAAGATACTGTCGGATGAAGAAGCAAAGCCATTCCTGAGCATGGCTTATATTCATGGAGGAAAGTGGGTTGTCCCTCCTCCCAATCTGTGA 1107 0.5086 MVPKKLLHLETPATVLAVLTLALHFFSHPNNAISNPRGTVRGSFFLDQQLAAAEDGPVRIVRVRRDGGGDFRTVTEAVNSIPSGNKRRVVVWIGIGEYREKVTVDRSKPFVTFYGERNGDDAEEMPTITYNGTALKYGTVDSATVAVDSDYFVAVNVRFMNSSPMPDENSVGAQAVAMRISGDKAAFYNCKFIGFQDTLCDDKGRHFFNDCYIQGTYDFIFGNGKSLYLRSTIKSVAKGLSVITAQGRESMAEDTGFTFVHCNITGSGKRNTYLGRDWKGSPRVVFAYTYMGSLISTRGWFHRQLSQHDDQSQRNQTIFYGEYRCMGPGAASSGRVKFDKILSDEEAKPFLSMAYIHGGKWVVPPPNL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2446 368 SUPERFAMILY Pectin lyase-like 60 362 IPR011050 -
Dod05g2446 368 Pfam Pectinesterase 62 358 IPR000070 GO:0030599|GO:0042545
Dod05g2446 368 Gene3D - 60 365 IPR012334 -
Dod05g2446 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 367 - -
Dod05g2446 368 PANTHER PECTINESTERASE 51 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2446 Dod-Chr5 50763591 50765959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2446 46 368 Carbohydrate Esterase AT5G07410 52.012 1.81e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2446 K01051 - gmx:100790786 531.176