Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2435 ATGAAGGCTCCATCCAATGGTTACTTGCCTAATTCTGGCGAAGGCGAAAGGAAGGCCATCAATTCTGAGTTATGGCATGCTTGTGCAGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCTGCATCCATGCAAAAGGAGACTGACTTTATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTGCATGCTGATCTTGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAGTATGAGAAGGAAGCAATACTTGCATCAGATATGGGTCTCAAGCAAAATCGACAACCTACTGAGTTCTTTTGCAAAACTCTTACTGCTAGTGACACAAGCACTCATGGTGGGTTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTTCCTCCTTTGGATTTTTCAATGCAACCTCCTGCTCAGGAACTTGTTTCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGAGGACAGCCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTTAGCACGAAAAGACTGTTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGTTTGAGGCGTGCTAACAGACAGCAGCCAGCACTTTCTTCATCAGTTATATCCAGTGACAGCATGCATATTGGCATTCTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCCAAGTATAATAAAGCCATGTACACTCAAGTTTCACTTGGAATGAGATTCAGAATGATGTTTGAGACAGAGGAATCTGGAGTTCGGAGATATATGGGTACAATCACTGGGATCAGTGACTTGGACCCAGTCCGATGGAAAAATTCACAATGGCGCAATCTCCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCGAGCAGAGTTTCAAGTTGGGAAATTGAACCAGTTGTGACTCCTTTCTACATCTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGACAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAAGATGCCTCAAGTTCTATCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTGTCAGCTTCTCAGTCTGGATTTTTTCCATCCATGTTACCATCTAATACTCTGCAGAGTAACCTTGGCACTGATGATCCATCCAAGTTATTGAGTTTTCAATCTCCTGCTGTCCTTTCCGCGCCAAGTCTTCAATTTAACAAACCTAATTTGCCAAATCAAATGAACCAATTGCAACAGCCCCCACTGTCATGGCCTCAGCAGCAACAACAGCTGCAGCAACAGCAGCAACAACAGCAGCACCAGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAGCTACAGCAGCAGCAACAACAGCAACTGCAGCTACAGCAGCAGCAACTCCAGCAGCAGCAGCAGCAGCAACACCAACTACAGCAGCAACACCAACACCAGCAGCTCCAGTCATTGCTGCAAGCACCAATAAACCAGCTCCAGCAGCAGAGGCAACAGCAGCTGCATGAACCACAAAACCTGTCATTACTGCAGCAACAACAACAGGCCCAACTGCCACAGCAGCCACAGAAACAGCAACAATCTTGTCAAAATGCCATCATGAATAATGGCCTAGTTGCTTCTAACCAGATTACAAATCAGTTTGCACAGCAACCAGTAGGCTATTCTCAGCTTCAGCAGCAGCAATTTCTTTCAGGAGGTATACCACCCCAGCAAAGCATCCAACCGGCTAGTAAGAATACATTCCCATTGACATCCCTACCACAAGACTCACAATTTCAGCAACAGATGGACCAGCAAGCTAGTCTCTTACAGAGGCAACAGCAACAGACACAGTTGCAACAACCTCCAATGCAGTTTTTGCAACAAAACCTGTCACAGGGGGCACCACAACAACCACCAGTGACTCAAATGTCACAACCGATCCCCTCAGAACAACTACAGCTACAGTTGCTACAGAAATGGCAGCAGCAACAACAACATCAGCAGCAGCAGCAACTTCTTTCCACATCGAACCCACTTTTACAGTCTCAGCTTCTACAGCAACAAAACCAACAATTAACACAGCTGCCTGTATCTCAGCATCAGCAGCAACAGCTTGGCAATAATGCATTCTCAACTGAGAAGCTTCTTAATGGCAACAACTTCTCTTCTTCAGCTCTTATGCAATCACAACAGCTTCCTGTGAGCCAACCCCAGAATACACAGAAATCACATACACTAACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCTCCATCATGTTCAACATCGCCGTCCACTAATAACTGTCAGATATCTCCGTCAAACCTCCTGAAAAGAAATCAACAAATACCAGCCACATTAGGGGGGAGTTTGGCTGTTGAGCCCACTAGTAACCTGATCCAGGACCTTCAGGGCAAGTCCGACATGCAAATCAAACATGAGTTCAGCAGTGTAAAAGGACCTGACCAGCTAAAGTATAAAGGGACAGTTACTGACCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAACATACCACTTTCCAACTTCTGCATGGATGCGGATGTCCAATCACACCCTAGAAACAGTCTCCCATTTGACTCTAATCTTGATGTACTAACACCTGATACTATGCTTTTGAGGGGTTATGACTCTCAAAAAGACCTTCAAAATTTGCTGTCTAATTATGGTGGTGCTCCAAGGGACATTGAAACTGAACTGTCCACTGCTGATATCAGCTCACAGTCATTTGGATTGCCAAACATACCTCTTAAGCCTGGTTGCTCGAGTGATGTTGGCATCAATGATACTGGGGTGTTGAATAATGGCTTGCGGACTAACCAGACTCAAAGAATGCGAACATATACTAAGGTTCAAAAGCGGGGCTCTGTTGGAAGATGTATTGACGTCACTCGCTACAAGGGATATGATGAACTCCGGCATGATTTGGCTCGAATGTTTGGGATTGAAGGGCAGCTAGAAGACCCCCATAGGACTGAGTGGAAACTGGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGAATTTAGGTAGTGTTGCAATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCTTCATTTAACAGGTGA 3480 0.45 MKAPSNGYLPNSGEGERKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADLETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVSKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSSWEIEPVVTPFYICPPPFFRPKFPRQPGMTDDESDIENAFKRAMPWLGDDFGMKDASSSIFPGLSLVQWMSMQQNNQLSASQSGFFPSMLPSNTLQSNLGTDDPSKLLSFQSPAVLSAPSLQFNKPNLPNQMNQLQQPPLSWPQQQQQLQQQQQQQQHQQQQQQQQQQQQQLQQQQQQQLQLQQQQLQQQQQQQHQLQQQHQHQQLQSLLQAPINQLQQQRQQQLHEPQNLSLLQQQQQAQLPQQPQKQQQSCQNAIMNNGLVASNQITNQFAQQPVGYSQLQQQQFLSGGIPPQQSIQPASKNTFPLTSLPQDSQFQQQMDQQASLLQRQQQQTQLQQPPMQFLQQNLSQGAPQQPPVTQMSQPIPSEQLQLQLLQKWQQQQQHQQQQQLLSTSNPLLQSQLLQQQNQQLTQLPVSQHQQQQLGNNAFSTEKLLNGNNFSSSALMQSQQLPVSQPQNTQKSHTLTRAPSTLTDGDAPSCSTSPSTNNCQISPSNLLKRNQQIPATLGGSLAVEPTSNLIQDLQGKSDMQIKHEFSSVKGPDQLKYKGTVTDQLEASSSGTSYCLDPGNVQQNIPLSNFCMDADVQSHPRNSLPFDSNLDVLTPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPNIPLKPGCSSDVGINDTGVLNNGLRTNQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPHRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGSVAIPNQACSGTDSGNAWRGQYDDNSAASFNR* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2435 1159 Pfam AUX/IAA family 1029 1118 IPR033389 -
Dod05g2435 1159 ProSiteProfiles PB1 domain profile. 1032 1125 IPR000270 GO:0005515
Dod05g2435 1159 PANTHER AUXIN RESPONSE FACTOR 19 1 526 - -
Dod05g2435 1159 Gene3D - 123 227 IPR015300 -
Dod05g2435 1159 Coils Coil 494 557 - -
Dod05g2435 1159 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Dod05g2435 1159 SMART B3_2 126 228 IPR003340 GO:0003677
Dod05g2435 1159 CDD B3_DNA 125 217 IPR003340 GO:0003677
Dod05g2435 1159 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod05g2435 1159 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Dod05g2435 1159 MobiDBLite consensus disorder prediction 470 499 - -
Dod05g2435 1159 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Dod05g2435 1159 MobiDBLite consensus disorder prediction 796 843 - -
Dod05g2435 1159 SUPERFAMILY CAD & PB1 domains 1045 1110 - -
Dod05g2435 1159 MobiDBLite consensus disorder prediction 640 689 - -
Dod05g2435 1159 Gene3D - 289 360 - -
Dod05g2435 1159 Gene3D - 1027 1121 - -
Dod05g2435 1159 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 557 1147 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod05g2435 1159 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 526 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod05g2435 1159 PANTHER AUXIN RESPONSE FACTOR 19 557 1147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2435 Dod-Chr5 50621572 50627633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2435 1 484 B3 DNA Binding Superfamily AT1G19220 84.711 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod05g2435 AUX_IAA 1.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2435 K14486 - gmx:100805456 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2435 05 50621572 50627633 Dod03g1606 03 22062923 22071662 PCT