Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2434 ATGGCGACCTCTCAGCTGATAGCATCGTCGATTTCTACGAGGAACTTGCGCTCATTTGAAGGGTTCCGACCATCGGCGCTTCAGTTTCCTTCTGTCGGGCGTGTCAGTGTCAGGGTTGGCACTCTCATACAAAGGCCTTGCCCCTCTCTTGTTGTCAAAGCTGCCACTGTTGTCGCCCCTAAGTACACTGCAATTAAGCCTCTGGGTGATAGAGTGCTTGTAAAGATTAAGGATGCAGAGGAGAAGAGTGAGGGTGGGATTTTACTCCCAACAACTGCTCAGACAAAACCTCAAGGGGGTGAGGTGGTTGCCATTGGAGAAGGAAAGTCAGTCGGGAATAGCAAGGTGGAATTTAGTGTTAAGGCAGGAGCACAAGTTGTGTATTCGAAGTATGCGGGGACAGAGGTGGAATTCAATGGTACAAAGCATCTTATACTGAAGGATGATGACATAATTGGCATCCTTGAAACTGACGAGGTCAAGGATCTTAAACCCTTGAACGATAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGGGGTTTATTGCTCACAGAAGCATCCAAGGAGAAACCATCTATTGGAACAGTGATAGCAGTTGGTCCAGGCACTCTGGATGAGCAAGGCAACAGAAAACCATTGTCTGTTACACCTGGAAACACAGTTATGTACTCCAAATATGCGGGTAATGACTTCAAGGGCAAAGATGGCTCTGACTACATTACCTTGAGGGCCTCCGATGTCATGGCTGTCCTCTCCTAG 771 0.476 MATSQLIASSISTRNLRSFEGFRPSALQFPSVGRVSVRVGTLIQRPCPSLVVKAATVVAPKYTAIKPLGDRVLVKIKDAEEKSEGGILLPTTAQTKPQGGEVVAIGEGKSVGNSKVEFSVKAGAQVVYSKYAGTEVEFNGTKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGTLDEQGNRKPLSVTPGNTVMYSKYAGNDFKGKDGSDYITLRASDVMAVLS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2434 256 Hamap Co-chaperonin GroES [groES]. 64 156 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 ProSitePatterns Chaperonins cpn10 signature. 163 187 IPR018369 GO:0005524|GO:0006457
Dod05g2434 256 Gene3D GroES chaperonin 57 157 IPR037124 GO:0006457
Dod05g2434 256 Gene3D GroES chaperonin 158 256 IPR037124 GO:0006457
Dod05g2434 256 SUPERFAMILY GroES-like 162 255 IPR011032 -
Dod05g2434 256 SMART Cpn10_2 162 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 SMART Cpn10_2 64 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 SUPERFAMILY GroES-like 63 156 IPR011032 -
Dod05g2434 256 ProSitePatterns Chaperonins cpn10 signature. 65 89 IPR018369 GO:0005524|GO:0006457
Dod05g2434 256 Pfam Chaperonin 10 Kd subunit 65 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 Pfam Chaperonin 10 Kd subunit 163 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 CDD cpn10 65 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 256 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 PIRSF Cpn21 1 256 IPR017416 GO:0006457|GO:0046914|GO:1901671
Dod05g2434 256 PANTHER GROES CHAPERONIN 1 256 - -
Dod05g2434 256 PRINTS 10kDa chaperonin signature 121 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 PRINTS 10kDa chaperonin signature 65 80 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 PRINTS 10kDa chaperonin signature 87 108 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 PRINTS 10kDa chaperonin signature 142 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 CDD cpn10 163 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod05g2434 256 Hamap Co-chaperonin GroES [groES]. 162 256 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2434 Dod-Chr5 50617884 50620182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2434 1 256 Calmodulin-binding Proteins AT5G20720 70.543 3.77e-129 364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2434 05 50617884 50620182 Dod03g1605 03 22057039 22060508 PCT