LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g2432	ATGGTGAAACCGAAGATGGAGAAGGCAGAGGAGCAGAACGATTCGAATTCACAGTACAGAGGTGTCCGGAAGAGGAAGTGGGGCAAGTGGGTGTCCGAAATAAGGCTGCCCAACAGCCGCCAGAGGATTTGGTTGGGTTCCTACGACACCGCCGAGAAGGCCGCGCGTGCATTCGACGCAGCCATGTTCTGCTTACGTGGCAGCAATGGCAGGTTTAATTTCCCCGACAACCCGCCCGACATCGCCGGAGGAAGGAACATGACTCCCTCTCAGATTCAGGCCGCGGCCGCACAGTTCGCAGAGCAGGAGCCCCCAGAGGGGAATTCGGGTCGACCCGAGTCCCCCATGGAGTGTTCGATGGAAGGGACCGTGTCGAAAGTGGGTTCTCCCTCCAATTCTGTTTCCGAGGTGACGGTGCAAACGGACGGTGACCTCACCCTCAATGTCGGGTCGGTTCCCAATCTACTTGCCCCCATCGGCTCGGGTAATTTTGACACTGGTTACGGCTTTTTCCCGGGTTTCGATGAGTTTGGCGGCGATTTCTACGTGCCCGGAATGCCGAATGTTGATTATGGAGAAGAAAACTTGAATGGATTGATAGTGGAAGAGAACATGGATGGAATGATAATGGACTTGTGGAATTTCTAA	648	0.5463	MVKPKMEKAEEQNDSNSQYRGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGSNGRFNFPDNPPDIAGGRNMTPSQIQAAAAQFAEQEPPEGNSGRPESPMECSMEGTVSKVGSPSNSVSEVTVQTDGDLTLNVGSVPNLLAPIGSGNFDTGYGFFPGFDEFGGDFYVPGMPNVDYGEENLNGLIVEENMDGMIMDLWNF*	216

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g2432	215	SMART	rav1_2	18	81	IPR001471	GO:0003700\|GO:0006355
	Dod05g2432	215	ProSiteProfiles	AP2/ERF domain profile.	18	75	IPR001471	GO:0003700\|GO:0006355
	Dod05g2432	215	Gene3D	AP2/ERF domain	17	76	IPR036955	GO:0003700\|GO:0006355
	Dod05g2432	215	MobiDBLite	consensus disorder prediction	98	135	-	-
	Dod05g2432	215	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	4	215	-	-
	Dod05g2432	215	PANTHER	TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED	4	215	-	-
	Dod05g2432	215	SUPERFAMILY	DNA-binding domain	17	76	IPR016177	GO:0003677
	Dod05g2432	215	PRINTS	Ethylene responsive element binding protein signature	41	57	IPR001471	GO:0003700\|GO:0006355
	Dod05g2432	215	PRINTS	Ethylene responsive element binding protein signature	19	30	IPR001471	GO:0003700\|GO:0006355
	Dod05g2432	215	MobiDBLite	consensus disorder prediction	1	22	-	-
	Dod05g2432	215	Pfam	AP2 domain	18	67	IPR001471	GO:0003700\|GO:0006355
	Dod05g2432	215	CDD	AP2	17	77	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g2432	Dod-Chr5	50598267	50598914	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g2432	17	215	AP2-EREBP Transcription Factor Family	AT1G19210	48.039	2.95e-54	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dod05g2432		AP2	8.5e-14	CL0081